Wall clock time and date at job start Mon Mar 30 2020 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86803 * 120.00059 * 2 1 4 4 H 1.48499 * 109.46932 * 275.41620 * 3 2 1 5 5 H 1.48498 * 109.47024 * 35.41247 * 3 2 1 6 6 H 1.48493 * 109.47033 * 155.41908 * 3 2 1 7 7 C 1.39868 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99785 * 341.71943 * 7 2 1 9 9 C 1.41136 * 120.00242 * 161.71701 * 7 2 1 10 10 C 1.40888 * 120.15647 * 330.13030 * 9 7 2 11 11 C 1.36329 * 119.83526 * 179.97438 * 10 9 7 12 12 C 1.39564 * 120.16530 * 0.02562 * 11 10 9 13 13 N 1.38862 * 119.84795 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00412 * 179.72657 * 13 12 11 15 15 H 1.08998 * 109.26074 * 325.76694 * 14 13 12 16 16 C 1.52870 * 109.27232 * 85.26921 * 14 13 12 17 17 C 1.53292 * 108.59199 * 175.15877 * 16 14 13 18 18 C 1.52878 * 108.58211 * 285.55649 * 17 16 14 19 19 C 1.52710 * 110.15309 * 54.52229 * 18 17 16 20 20 H 1.09000 * 115.39031 * 127.16972 * 19 18 17 21 21 C 1.53651 * 116.03011 * 269.80112 * 19 18 17 22 22 C 1.52065 * 120.52192 * 338.52938 * 19 18 17 23 23 H 1.09001 * 115.93089 * 150.00412 * 22 19 18 24 24 C 1.39569 * 120.31563 * 0.22956 * 12 11 10 25 25 C 1.36344 * 120.15535 * 359.48706 * 24 12 11 26 26 H 0.96997 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.07901 * 359.95810 * 10 9 7 28 28 H 1.08003 * 119.91884 * 180.02562 * 11 10 9 29 29 H 0.97001 * 119.99763 * 359.97438 * 13 12 11 30 30 H 1.09001 * 109.61586 * 294.89278 * 16 14 13 31 31 H 1.09005 * 109.61507 * 55.24725 * 16 14 13 32 32 H 1.09000 * 109.62321 * 45.28715 * 17 16 14 33 33 H 1.09003 * 109.61787 * 165.64734 * 17 16 14 34 34 H 1.08999 * 109.35813 * 174.73155 * 18 17 16 35 35 H 1.09004 * 109.35852 * 294.30970 * 18 17 16 36 36 H 1.09000 * 117.53542 * 219.05953 * 21 19 18 37 37 H 1.09000 * 117.53724 * 4.23346 * 21 19 18 38 38 H 1.07996 * 119.92500 * 179.72151 * 24 12 11 39 39 H 1.08004 * 120.07774 * 180.27477 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3761 2.1125 -1.3938 5 1 1.5024 2.6169 0.8113 6 1 3.5931 1.4098 0.5824 7 6 2.0084 -1.2113 -0.0005 8 1 1.5094 -2.1231 0.2924 9 6 3.3664 -1.2419 -0.3840 10 6 3.8594 -0.3091 -1.3176 11 6 5.1724 -0.3443 -1.6830 12 6 6.0274 -1.3017 -1.1350 13 7 7.3634 -1.3319 -1.5122 14 6 8.2653 -2.3315 -0.9346 15 1 7.9735 -2.5253 0.0976 16 6 8.1639 -3.6273 -1.7392 17 6 9.1993 -4.6203 -1.1990 18 6 10.5859 -4.1838 -1.6720 19 6 10.8469 -2.7340 -1.2694 20 1 11.7727 -2.5607 -0.7209 21 6 10.4238 -1.6647 -2.2884 22 6 9.6890 -1.7978 -0.9611 23 1 9.8928 -1.0107 -0.2350 24 6 5.5447 -2.2323 -0.2135 25 6 4.2353 -2.2052 0.1654 26 1 -0.4850 0.8400 -0.0004 27 1 3.1988 0.4319 -1.7430 28 1 5.5519 0.3704 -2.3983 29 1 7.7004 -0.6888 -2.1554 30 1 7.1636 -4.0471 -1.6323 31 1 8.3640 -3.4217 -2.7908 32 1 9.1687 -4.6245 -0.1094 33 1 8.9791 -5.6195 -1.5750 34 1 11.3410 -4.8261 -1.2188 35 1 10.6424 -4.2734 -2.7569 36 1 11.0798 -0.8038 -2.4172 37 1 9.9076 -2.0015 -3.1874 38 1 6.2109 -2.9731 0.2032 39 1 3.8642 -2.9231 0.8819 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302629948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:03 Heat of formation + Delta-G solvation = 19.636295 kcal Electronic energy + Delta-G solvation = -18688.234630 eV Core-core repulsion = 15980.606026 eV Total energy + Delta-G solvation = -2707.628604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94664 -39.58851 -36.41984 -34.80599 -33.82576 -31.85237 -31.46774 -29.46378 -26.25473 -25.12459 -23.66131 -23.09062 -22.32973 -21.50426 -19.64904 -19.06790 -17.96969 -17.43766 -16.91287 -16.39868 -15.62177 -15.23161 -15.14789 -14.71498 -14.56115 -14.28433 -14.08582 -14.03512 -13.77279 -13.53034 -13.05373 -12.81234 -12.53049 -12.37392 -12.10026 -11.95595 -11.85135 -11.81149 -11.42066 -11.24197 -11.05019 -10.77162 -10.62551 -10.39192 -9.56539 -8.76241 -8.27558 -6.16437 0.87903 0.97833 1.28735 1.43538 1.52394 2.18861 2.55428 2.71476 3.12058 3.60201 3.70982 3.81417 4.03597 4.05696 4.21586 4.28018 4.32630 4.36478 4.49879 4.65185 4.68581 4.75339 4.76108 4.92512 4.97709 5.07838 5.10429 5.13836 5.22876 5.28705 5.35252 5.36702 5.42605 5.48971 5.57172 5.62001 5.80136 6.00326 6.25806 6.44150 6.69703 6.91658 7.00146 7.22709 8.34537 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.043842 B = 0.004621 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.497219 B = 6058.354067 C = 6467.810643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.042 3.958 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.491 4.491 8 H 0.048 0.952 9 C 0.025 3.975 10 C -0.199 4.199 11 C -0.160 4.160 12 C 0.129 3.871 13 N -0.743 5.743 14 C 0.191 3.809 15 H 0.064 0.936 16 C -0.133 4.133 17 C -0.115 4.115 18 C -0.088 4.088 19 C -0.129 4.129 20 H 0.116 0.884 21 C -0.174 4.174 22 C -0.159 4.159 23 H 0.098 0.902 24 C -0.154 4.154 25 C -0.172 4.172 26 H 0.287 0.713 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.396 0.604 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.872 -3.569 -3.768 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.168 4.168 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.219 4.219 11 C -0.182 4.182 12 C 0.028 3.972 13 N -0.375 5.375 14 C 0.086 3.914 15 H 0.082 0.918 16 C -0.172 4.172 17 C -0.153 4.153 18 C -0.125 4.125 19 C -0.148 4.148 20 H 0.134 0.866 21 C -0.211 4.211 22 C -0.178 4.178 23 H 0.116 0.884 24 C -0.176 4.176 25 C -0.192 4.192 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.139 0.861 29 H 0.230 0.770 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 22.674 -3.624 -3.644 23.249 hybrid contribution -0.648 0.878 -0.068 1.094 sum 22.026 -2.745 -3.713 22.505 Atomic orbital electron populations 1.69783 1.09043 1.30688 1.40516 1.26702 0.95250 1.03855 0.91022 0.85504 0.79485 0.77026 0.79089 1.18687 1.20876 1.17928 1.19266 0.94869 0.95191 1.42943 0.93383 1.17728 0.92912 0.94121 0.93044 1.20686 0.96165 1.03059 1.01963 1.20175 0.93263 1.00935 1.03849 1.17488 0.85310 0.96518 0.97857 1.44114 1.04938 1.38078 1.50355 1.20012 0.87194 0.87601 0.96620 0.91772 1.22058 0.99153 0.95876 1.00088 1.21553 0.94364 0.98365 1.01030 1.21077 0.96815 0.93481 1.01134 1.22312 0.97828 0.92296 1.02376 0.86560 1.23136 1.03293 1.01820 0.92855 1.21931 0.91998 1.02931 1.00958 0.88395 1.20280 0.95366 1.00850 1.01152 1.20811 0.93568 1.02245 1.02606 0.90265 0.88835 0.86121 0.76955 0.93336 0.91914 0.91706 0.91037 0.90000 0.91351 0.87934 0.88958 0.85992 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.99 13.93 21.82 0.30 -50.68 16 2 C 0.04 2.42 5.40 85.23 0.46 2.88 16 3 Si 0.96 45.49 24.51 68.60 1.68 47.17 16 4 H -0.26 -11.63 6.70 99.48 0.67 -10.96 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -12.25 6.87 99.48 0.68 -11.57 16 7 C -0.49 -29.21 9.55 23.38 0.22 -28.98 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 C 0.03 1.34 5.10 -21.27 -0.11 1.23 16 10 C -0.20 -9.75 7.11 22.47 0.16 -9.59 16 11 C -0.16 -6.65 9.82 22.14 0.22 -6.43 16 12 C 0.13 4.90 6.65 38.67 0.26 5.16 16 13 N -0.74 -21.59 5.19 -320.19 -1.66 -23.25 16 14 C 0.19 4.64 2.21 44.64 0.10 4.74 16 15 H 0.06 1.74 6.41 -2.39 -0.02 1.72 16 16 C -0.13 -3.01 5.18 30.65 0.16 -2.85 16 17 C -0.12 -2.00 5.93 30.65 0.18 -1.82 16 18 C -0.09 -1.23 5.83 30.46 0.18 -1.05 16 19 C -0.13 -1.93 6.19 -10.98 -0.07 -2.00 16 20 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 21 C -0.17 -2.76 9.66 30.58 0.30 -2.46 16 22 C -0.16 -3.04 5.45 -11.64 -0.06 -3.11 16 23 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 24 C -0.15 -6.25 8.77 22.15 0.19 -6.06 16 25 C -0.17 -8.22 9.74 22.48 0.22 -8.00 16 26 H 0.29 15.19 8.30 -92.71 -0.77 14.43 16 27 H 0.09 4.63 4.73 -2.91 -0.01 4.62 16 28 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 29 H 0.40 10.25 8.60 -92.71 -0.80 9.46 16 30 H 0.05 1.32 7.60 -2.39 -0.02 1.30 16 31 H 0.06 1.42 7.12 -2.38 -0.02 1.40 16 32 H 0.06 1.14 8.04 -2.39 -0.02 1.12 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.93 8.06 -2.38 -0.02 0.92 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.56 7.27 -2.39 -0.02 1.54 16 38 H 0.12 4.26 5.95 -2.91 -0.02 4.24 16 39 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -63.04 303.85 2.91 -60.12 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.19 Total: 24.98 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 2.40 Total: -58.34 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.36 Total: -73.93 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.68 Total: 47.17 kcal Total: -63.04 2.91 -60.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302629948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.760 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds