Wall clock time and date at job start Mon Mar 30 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86808 * 119.99659 * 2 1 4 4 H 1.48502 * 109.46860 * 274.65407 * 3 2 1 5 5 H 1.48501 * 109.47022 * 34.65034 * 3 2 1 6 6 H 1.48494 * 109.47130 * 154.65358 * 3 2 1 7 7 C 1.39865 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99917 * 162.12821 * 7 2 1 9 9 C 1.41136 * 119.99791 * 342.12620 * 7 2 1 10 10 C 1.40891 * 120.15166 * 155.08186 * 9 7 2 11 11 C 1.36340 * 119.83574 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.15843 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84069 * 179.97438 * 12 11 10 14 14 C 1.46507 * 120.00105 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46949 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46663 * 180.02562 * 15 14 13 17 17 C 1.36885 * 126.39485 * 270.02675 * 16 15 14 18 18 C 1.34671 * 106.81745 * 179.97438 * 17 16 15 19 19 N 1.34129 * 108.01738 * 359.97438 * 18 17 16 20 20 C 1.30499 * 109.26057 * 0.02562 * 19 18 17 21 21 C 1.39568 * 120.31895 * 0.25649 * 12 11 10 22 22 C 1.36340 * 120.15956 * 359.48237 * 21 12 11 23 23 H 0.96997 * 120.00737 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08223 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.92459 * 179.97438 * 11 10 9 26 26 H 0.97001 * 119.99915 * 0.02562 * 13 12 11 27 27 H 1.09000 * 109.47004 * 60.00554 * 14 13 12 28 28 H 1.08995 * 109.47266 * 300.00707 * 14 13 12 29 29 H 1.08995 * 109.47463 * 60.00592 * 15 14 13 30 30 H 1.09002 * 109.46768 * 299.99877 * 15 14 13 31 31 H 1.07991 * 126.58990 * 359.97438 * 17 16 15 32 32 H 1.07997 * 125.98976 * 180.26590 * 18 17 16 33 33 H 1.08000 * 125.65166 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.91893 * 179.71952 * 21 12 11 35 35 H 1.07995 * 120.08563 * 180.23661 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6179 0.0000 4 1 2.3920 2.1033 -1.3955 5 1 1.4929 2.6224 0.7960 6 1 3.5862 1.4140 0.5993 7 6 2.0084 -1.2112 0.0005 8 1 3.0493 -1.2338 -0.2865 9 6 1.3539 -2.4038 0.3762 10 6 1.8230 -3.6467 -0.0932 11 6 1.1855 -4.7947 0.2734 12 6 0.0704 -4.7408 1.1110 13 7 -0.5742 -5.9141 1.4797 14 6 -1.7446 -5.8616 2.3593 15 6 -2.2595 -7.2807 2.6083 16 7 -3.4303 -7.2281 3.4874 17 6 -3.4221 -7.2824 4.8551 18 6 -4.7053 -7.2020 5.2559 19 7 -5.4759 -7.1009 4.1627 20 6 -4.7190 -7.1160 3.0997 21 6 -0.4034 -3.5128 1.5751 22 6 0.2273 -2.3571 1.2210 23 1 -0.4851 0.8400 0.0004 24 1 2.6855 -3.6898 -0.7417 25 1 1.5436 -5.7481 -0.0859 26 1 -0.2490 -6.7686 1.1556 27 1 -2.5276 -5.2683 1.8871 28 1 -1.4655 -5.4049 3.3088 29 1 -1.4764 -7.8737 3.0807 30 1 -2.5386 -7.7377 1.6589 31 1 -2.5536 -7.3723 5.4906 32 1 -5.0526 -7.2121 6.2785 33 1 -5.0659 -7.0500 2.0791 34 1 -1.2695 -3.4782 2.2193 35 1 -0.1381 -1.4078 1.5839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386303106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:41 Heat of formation + Delta-G solvation = 87.167504 kcal Electronic energy + Delta-G solvation = -17572.802958 eV Core-core repulsion = 14764.562383 eV Total energy + Delta-G solvation = -2808.240575 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09834 -38.13197 -35.96581 -34.05546 -32.73781 -29.81739 -29.54373 -29.34218 -27.57498 -24.50255 -23.31286 -21.41547 -21.30646 -20.70859 -20.03223 -17.61539 -17.27294 -16.15732 -15.52453 -15.15871 -15.01405 -14.54081 -14.07899 -13.95136 -13.83709 -13.28821 -12.87633 -12.64214 -12.35904 -12.28120 -11.84590 -11.67733 -11.24382 -11.05608 -10.87895 -10.52297 -10.08039 -9.78450 -9.72473 -9.37072 -9.31306 -8.66023 -8.60301 -7.57658 -6.71339 -6.50432 -4.10856 1.95903 2.59785 2.85778 3.02634 3.10672 3.12100 3.16573 3.28671 4.01149 4.20225 4.44213 4.64419 4.69918 4.71000 4.84159 5.01949 5.33874 5.53673 5.69202 5.78818 5.82994 6.17578 6.18082 6.23285 6.63590 6.79099 6.85889 7.06507 7.12572 7.28500 7.43824 7.60872 7.74532 7.98502 8.08299 8.17523 8.37858 8.55565 8.70714 8.99544 9.07086 10.31261 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.003696 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.413306 B = 7573.114633 C = 8148.926518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.189 4.189 11 C -0.153 4.153 12 C 0.084 3.916 13 N -0.760 5.760 14 C 0.128 3.872 15 C 0.096 3.904 16 N -0.454 5.454 17 C -0.054 4.054 18 C -0.034 4.034 19 N -0.498 5.498 20 C 0.183 3.817 21 C -0.160 4.160 22 C -0.126 4.126 23 H 0.277 0.723 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.385 0.615 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -11.407 5.501 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.498 4.498 8 H 0.092 0.908 9 C 0.075 3.925 10 C -0.209 4.209 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.398 5.398 14 C 0.001 3.999 15 C -0.028 4.028 16 N -0.137 5.137 17 C -0.187 4.187 18 C -0.181 4.181 19 N -0.217 5.217 20 C -0.099 4.099 21 C -0.182 4.182 22 C -0.146 4.146 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.218 0.782 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.220 0.780 34 H 0.104 0.896 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.156 -11.074 5.507 13.399 hybrid contribution 1.344 0.464 -0.195 1.435 sum -3.812 -10.609 5.313 12.463 Atomic orbital electron populations 1.69847 1.07422 1.28777 1.37178 1.25815 0.94657 1.00991 0.92595 0.86396 0.80749 0.81213 0.78878 1.19788 1.20217 1.18615 1.19387 0.97950 0.91372 1.41049 0.90836 1.17515 0.92280 0.92043 0.90618 1.20552 1.02855 0.92593 1.04943 1.19792 0.97714 0.97124 1.02862 1.17258 0.96047 0.85262 1.02696 1.43588 1.32725 1.06301 1.57182 1.21230 0.89642 0.93859 0.95181 1.22039 0.86719 0.99290 0.94709 1.45467 1.07928 1.53573 1.06706 1.22777 1.00763 1.11699 0.83494 1.22294 0.89557 1.08036 0.98255 1.70292 1.33660 1.19796 0.97909 1.25045 0.79223 1.05328 1.00301 1.20088 1.01309 0.91979 1.04775 1.20935 0.98240 0.96449 0.99001 0.91211 0.88922 0.89510 0.78241 0.92666 0.92801 0.88672 0.88430 0.80968 0.81462 0.77957 0.89556 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.20 10.97 55.54 0.61 -20.59 16 2 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 3 Si 0.90 18.99 29.60 -169.99 -5.03 13.96 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.47 -12.52 9.03 -37.87 -0.34 -12.86 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.08 2.09 5.57 -106.79 -0.60 1.49 16 10 C -0.19 -4.57 9.74 -39.26 -0.38 -4.96 16 11 C -0.15 -3.29 9.82 -39.77 -0.39 -3.69 16 12 C 0.08 1.74 6.67 -83.69 -0.56 1.18 16 13 N -0.76 -11.84 5.70 -58.49 -0.33 -12.17 16 14 C 0.13 1.69 5.21 -4.04 -0.02 1.67 16 15 C 0.10 0.89 6.27 -4.04 -0.03 0.86 16 16 N -0.45 -4.89 2.75 -118.58 -0.33 -5.21 16 17 C -0.05 -0.58 11.58 -16.56 -0.19 -0.77 16 18 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 19 N -0.50 -6.87 11.25 -14.67 -0.16 -7.04 16 20 C 0.18 2.14 12.56 -90.38 -1.14 1.00 16 21 C -0.16 -3.67 9.23 -39.77 -0.37 -4.04 16 22 C -0.13 -3.27 8.63 -39.26 -0.34 -3.61 16 23 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 24 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 25 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.39 5.00 8.47 -40.82 -0.35 4.66 16 27 H 0.06 0.82 7.91 -51.93 -0.41 0.41 16 28 H 0.05 0.79 7.94 -51.93 -0.41 0.37 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 35 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -30.33 302.86 -9.68 -40.02 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.35 Total: 8.98 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -4.65 Total: -22.50 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.22 Total: -45.02 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.33 -9.68 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386303106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.184 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds