Wall clock time and date at job start Mon Mar 30 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86808 * 119.99659 * 2 1 4 4 H 1.48502 * 109.46860 * 274.65407 * 3 2 1 5 5 H 1.48501 * 109.47022 * 34.65034 * 3 2 1 6 6 H 1.48494 * 109.47130 * 154.65358 * 3 2 1 7 7 C 1.39865 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99917 * 162.12821 * 7 2 1 9 9 C 1.41136 * 119.99791 * 342.12620 * 7 2 1 10 10 C 1.40891 * 120.15166 * 155.08186 * 9 7 2 11 11 C 1.36340 * 119.83574 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.15843 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84069 * 179.97438 * 12 11 10 14 14 C 1.46507 * 120.00105 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46949 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46663 * 180.02562 * 15 14 13 17 17 C 1.36885 * 126.39485 * 270.02675 * 16 15 14 18 18 C 1.34671 * 106.81745 * 179.97438 * 17 16 15 19 19 N 1.34129 * 108.01738 * 359.97438 * 18 17 16 20 20 C 1.30499 * 109.26057 * 0.02562 * 19 18 17 21 21 C 1.39568 * 120.31895 * 0.25649 * 12 11 10 22 22 C 1.36340 * 120.15956 * 359.48237 * 21 12 11 23 23 H 0.96997 * 120.00737 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08223 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.92459 * 179.97438 * 11 10 9 26 26 H 0.97001 * 119.99915 * 0.02562 * 13 12 11 27 27 H 1.09000 * 109.47004 * 60.00554 * 14 13 12 28 28 H 1.08995 * 109.47266 * 300.00707 * 14 13 12 29 29 H 1.08995 * 109.47463 * 60.00592 * 15 14 13 30 30 H 1.09002 * 109.46768 * 299.99877 * 15 14 13 31 31 H 1.07991 * 126.58990 * 359.97438 * 17 16 15 32 32 H 1.07997 * 125.98976 * 180.26590 * 18 17 16 33 33 H 1.08000 * 125.65166 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.91893 * 179.71952 * 21 12 11 35 35 H 1.07995 * 120.08563 * 180.23661 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6179 0.0000 4 1 2.3920 2.1033 -1.3955 5 1 1.4929 2.6224 0.7960 6 1 3.5862 1.4140 0.5993 7 6 2.0084 -1.2112 0.0005 8 1 3.0493 -1.2338 -0.2865 9 6 1.3539 -2.4038 0.3762 10 6 1.8230 -3.6467 -0.0932 11 6 1.1855 -4.7947 0.2734 12 6 0.0704 -4.7408 1.1110 13 7 -0.5742 -5.9141 1.4797 14 6 -1.7446 -5.8616 2.3593 15 6 -2.2595 -7.2807 2.6083 16 7 -3.4303 -7.2281 3.4874 17 6 -3.4221 -7.2824 4.8551 18 6 -4.7053 -7.2020 5.2559 19 7 -5.4759 -7.1009 4.1627 20 6 -4.7190 -7.1160 3.0997 21 6 -0.4034 -3.5128 1.5751 22 6 0.2273 -2.3571 1.2210 23 1 -0.4851 0.8400 0.0004 24 1 2.6855 -3.6898 -0.7417 25 1 1.5436 -5.7481 -0.0859 26 1 -0.2490 -6.7686 1.1556 27 1 -2.5276 -5.2683 1.8871 28 1 -1.4655 -5.4049 3.3088 29 1 -1.4764 -7.8737 3.0807 30 1 -2.5386 -7.7377 1.6589 31 1 -2.5536 -7.3723 5.4906 32 1 -5.0526 -7.2121 6.2785 33 1 -5.0659 -7.0500 2.0791 34 1 -1.2695 -3.4782 2.2193 35 1 -0.1381 -1.4078 1.5839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386303106.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:41 Heat of formation + Delta-G solvation = 70.671086 kcal Electronic energy + Delta-G solvation = -17573.518296 eV Core-core repulsion = 14764.562383 eV Total energy + Delta-G solvation = -2808.955913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.93532 -39.82246 -37.31458 -35.50809 -34.22106 -31.38077 -31.17555 -30.33954 -28.95737 -26.13697 -24.58643 -22.88210 -22.26332 -21.85227 -21.60869 -19.17121 -18.61045 -17.53554 -16.78008 -16.74654 -16.11125 -15.84027 -15.50023 -14.97741 -14.81254 -14.54052 -14.42910 -14.02585 -13.95521 -13.69135 -13.33555 -13.04951 -12.82524 -12.73597 -12.46756 -12.25034 -11.60544 -11.21623 -11.09109 -10.96217 -10.62912 -10.35669 -9.44936 -9.42973 -8.57391 -8.21892 -6.03695 1.08391 1.12028 1.16551 1.39660 1.51805 1.57784 1.77098 2.22853 2.26144 2.82417 2.96708 3.72017 3.78018 3.83778 3.89096 4.08186 4.26525 4.42319 4.50050 4.51561 4.64131 4.79540 4.82456 5.02200 5.10895 5.25308 5.34705 5.43158 5.63534 5.77721 5.82857 5.93627 6.17150 6.25632 6.35182 6.61009 6.82094 7.06573 7.11710 7.13696 7.28058 8.46015 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.003696 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.413306 B = 7573.114633 C = 8148.926518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.038 3.962 10 C -0.196 4.196 11 C -0.157 4.157 12 C 0.109 3.891 13 N -0.745 5.745 14 C 0.128 3.872 15 C 0.108 3.892 16 N -0.455 5.455 17 C -0.052 4.052 18 C -0.058 4.058 19 N -0.538 5.538 20 C 0.175 3.825 21 C -0.174 4.174 22 C -0.148 4.148 23 H 0.282 0.718 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.404 0.596 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.199 0.801 32 H 0.182 0.818 33 H 0.226 0.774 34 H 0.097 0.903 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -13.291 5.620 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.088 0.912 9 C 0.035 3.965 10 C -0.216 4.216 11 C -0.179 4.179 12 C 0.010 3.990 13 N -0.382 5.382 14 C 0.002 3.998 15 C -0.014 4.014 16 N -0.138 5.138 17 C -0.185 4.185 18 C -0.205 4.205 19 N -0.257 5.257 20 C -0.108 4.108 21 C -0.196 4.196 22 C -0.168 4.168 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.143 0.857 26 H 0.240 0.760 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.216 0.784 32 H 0.199 0.801 33 H 0.242 0.758 34 H 0.116 0.884 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.760 -13.019 5.636 14.964 hybrid contribution 1.138 0.842 -0.181 1.428 sum -3.622 -12.176 5.455 13.825 Atomic orbital electron populations 1.69916 1.08819 1.29810 1.38442 1.26620 0.95416 1.04165 0.91805 0.85303 0.79211 0.76666 0.79144 1.18963 1.19447 1.18402 1.19623 0.98075 0.92791 1.43234 0.91238 1.17830 0.93425 0.93217 0.92046 1.20796 1.03188 0.92831 1.04816 1.20127 0.97454 0.97868 1.02489 1.17344 0.95105 0.86273 1.00314 1.43517 1.32648 1.05406 1.56641 1.21258 0.88200 0.96585 0.93747 1.22006 0.86794 0.96630 0.96004 1.45562 1.07991 1.53301 1.06930 1.23223 1.01187 1.10301 0.83768 1.22692 0.90260 1.08786 0.98743 1.70258 1.35163 1.21182 0.99109 1.25533 0.79572 1.04736 1.00915 1.20214 1.01756 0.92210 1.05428 1.20840 0.99136 0.96650 1.00158 0.90781 0.88262 0.85691 0.76025 0.94174 0.93989 0.86306 0.86051 0.78397 0.80134 0.75783 0.88450 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.01 10.97 21.82 0.24 -45.77 16 2 C 0.03 1.68 5.13 85.23 0.44 2.11 16 3 Si 0.98 39.88 29.60 68.60 2.03 41.91 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.51 -28.17 9.03 23.38 0.21 -27.96 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.71 16 9 C 0.04 2.06 5.57 -21.27 -0.12 1.94 16 10 C -0.20 -9.45 9.74 22.48 0.22 -9.23 16 11 C -0.16 -6.41 9.82 22.15 0.22 -6.19 16 12 C 0.11 4.29 6.67 38.67 0.26 4.54 16 13 N -0.74 -20.43 5.70 -338.98 -1.93 -22.36 16 14 C 0.13 3.01 5.21 86.38 0.45 3.46 16 15 C 0.11 1.56 6.27 86.38 0.54 2.10 16 16 N -0.46 -8.49 2.75 -529.06 -1.46 -9.94 16 17 C -0.05 -0.97 11.58 83.09 0.96 -0.01 16 18 C -0.06 -1.31 11.87 83.52 0.99 -0.32 16 19 N -0.54 -14.33 11.25 -200.31 -2.25 -16.58 16 20 C 0.17 3.75 12.56 180.26 2.26 6.01 16 21 C -0.17 -7.97 9.23 22.15 0.20 -7.77 16 22 C -0.15 -7.91 8.63 22.48 0.19 -7.72 16 23 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 24 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 25 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 26 H 0.40 8.46 8.47 -92.71 -0.79 7.67 16 27 H 0.04 1.10 7.91 -2.39 -0.02 1.08 16 28 H 0.04 1.12 7.94 -2.39 -0.02 1.10 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.20 2.51 8.06 -2.92 -0.02 2.49 16 32 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.23 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.10 4.14 6.68 -2.91 -0.02 4.12 16 35 H 0.09 5.42 6.18 -2.91 -0.02 5.40 16 Total: -1.00 -68.29 302.86 3.77 -64.52 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.31 Total: 27.25 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 6.83 Total: -39.02 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -5.40 Total: -94.65 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -68.29 3.77 -64.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386303106.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.187 kcal (2) G-P(sol) polarization free energy of solvation -68.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds