Wall clock time and date at job start Mon Mar 30 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35994 * 117.00256 * 2 1 4 4 C 1.39270 * 119.86281 * 359.97438 * 3 2 1 5 5 C 1.37676 * 120.61724 * 179.72989 * 4 3 2 6 6 C 1.39099 * 119.99788 * 0.53552 * 5 4 3 7 7 N 1.37901 * 133.35945 * 179.81241 * 6 5 4 8 8 H 0.97005 * 125.07098 * 359.69051 * 7 6 5 9 9 C 1.36800 * 109.85481 * 179.70948 * 7 6 5 10 10 C 1.34250 * 109.93370 * 359.97438 * 9 7 6 11 11 C 1.50693 * 126.48904 * 179.97438 * 10 9 7 12 12 C 1.50700 * 115.55565 * 114.40261 * 11 10 9 13 13 H 1.07997 * 120.00184 * 144.31642 * 12 11 10 14 14 C 1.37881 * 119.99706 * 324.32150 * 12 11 10 15 15 N 1.31520 * 119.99965 * 3.04061 * 14 12 11 16 16 Si 1.86794 * 120.00248 * 183.04127 * 14 12 11 17 17 H 1.48496 * 109.47105 * 89.99664 * 16 14 12 18 18 H 1.48495 * 109.47350 * 209.99996 * 16 14 12 19 19 H 1.48510 * 109.46865 * 329.99789 * 16 14 12 20 20 C 1.53008 * 117.49831 * 328.72838 * 11 10 9 21 21 C 1.53006 * 117.49655 * 260.07054 * 11 10 9 22 22 C 1.40616 * 119.51975 * 359.48804 * 6 5 4 23 23 C 1.38037 * 119.86537 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.47439 * 299.99953 * 1 2 3 25 25 H 1.09006 * 109.47129 * 59.99743 * 1 2 3 26 26 H 1.08997 * 109.47464 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.68746 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.00371 * 180.02562 * 5 4 3 29 29 H 1.07995 * 125.03582 * 180.02562 * 9 7 6 30 30 H 0.96993 * 119.99828 * 175.00915 * 15 14 12 31 31 H 1.09000 * 117.49514 * 0.02562 * 20 11 10 32 32 H 1.09005 * 117.49636 * 145.02103 * 20 11 10 33 33 H 1.08999 * 117.49798 * 214.97766 * 21 11 10 34 34 H 1.08991 * 117.50114 * 0.02562 * 21 11 10 35 35 H 1.08001 * 120.20062 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2851 2.3779 -0.0005 5 6 1.8940 3.6127 0.0050 6 6 3.2820 3.7037 0.0000 7 7 4.1612 4.7661 0.0001 8 1 3.9049 5.7017 -0.0002 9 6 5.4487 4.3038 0.0002 10 6 5.4529 2.9613 0.0008 11 6 6.6672 2.0690 0.0005 12 6 6.8592 1.2319 1.2389 13 1 7.2659 0.2347 1.1589 14 6 6.5153 1.7393 2.4740 15 7 5.9645 2.9300 2.5656 16 14 6.8317 0.7354 4.0171 17 1 8.1853 1.0477 4.5419 18 1 5.8130 1.0715 5.0439 19 1 6.7484 -0.7113 3.6922 20 6 7.9231 2.5852 -0.7049 21 6 7.0972 1.4616 -1.3363 22 6 4.0534 2.5281 0.0002 23 6 3.4250 1.2806 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2071 2.3130 -0.0014 28 1 1.2940 4.5108 0.0050 29 1 6.3310 4.9265 0.0007 30 1 5.6565 3.2570 3.4252 31 1 7.8709 3.5704 -1.1683 32 1 8.8880 2.3190 -0.2733 33 1 7.5193 0.4567 -1.3200 34 1 6.5021 1.7077 -2.2156 35 1 4.0142 0.3755 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527392423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:11 Heat of formation + Delta-G solvation = 51.863334 kcal Electronic energy + Delta-G solvation = -19007.160426 eV Core-core repulsion = 16165.096196 eV Total energy + Delta-G solvation = -2842.064230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32333 -38.58701 -36.15099 -34.77574 -32.00238 -30.84022 -28.46792 -27.64924 -26.33800 -25.48977 -22.15940 -21.36444 -21.02330 -20.45699 -18.29199 -17.38676 -16.81506 -15.60754 -15.39385 -15.20469 -14.71144 -14.54116 -13.67669 -13.33078 -13.05749 -12.90537 -12.68573 -12.04418 -11.90694 -11.62262 -11.50085 -11.23551 -10.91304 -10.81928 -10.42292 -10.25722 -10.12326 -9.90120 -9.40029 -9.06951 -8.80850 -8.49727 -8.07826 -7.04655 -6.57095 -5.68870 -3.96914 1.93628 2.45882 3.34169 3.41759 3.45192 3.85142 3.91337 4.14726 4.47517 4.75824 5.10715 5.28939 5.42370 5.45845 5.52362 5.66722 5.70231 5.96626 6.03492 6.13595 6.24705 6.44799 6.49435 6.64390 6.74871 6.77616 6.83060 7.00032 7.07171 7.29165 7.32929 7.40163 7.57681 7.88272 8.01278 8.05330 8.21278 8.48201 8.57162 9.00397 9.62388 11.10580 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.008722 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.293938 B = 3209.336084 C = 3795.848237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.323 6.323 3 C 0.068 3.932 4 C -0.190 4.190 5 C -0.110 4.110 6 C 0.068 3.932 7 N -0.604 5.604 8 H 0.401 0.599 9 C 0.044 3.956 10 C -0.030 4.030 11 C 0.113 3.887 12 C -0.491 4.491 13 H 0.060 0.940 14 C 0.077 3.923 15 N -0.859 5.859 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.207 4.207 21 C -0.205 4.205 22 C -0.036 4.036 23 C -0.083 4.083 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.151 0.849 30 H 0.256 0.744 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 2.117 -5.163 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C 0.023 3.977 4 C -0.210 4.210 5 C -0.131 4.131 6 C -0.039 4.039 7 N -0.208 5.208 8 H 0.236 0.764 9 C -0.079 4.079 10 C -0.036 4.036 11 C 0.112 3.888 12 C -0.528 4.528 13 H 0.079 0.921 14 C -0.127 4.127 15 N -0.494 5.494 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.245 4.245 21 C -0.242 4.242 22 C -0.042 4.042 23 C -0.103 4.103 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.168 0.832 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.068 2.221 -5.000 9.748 hybrid contribution -0.251 0.221 1.147 1.195 sum -8.319 2.442 -3.853 9.488 Atomic orbital electron populations 1.22848 0.80066 1.02715 1.00563 1.86044 1.19909 1.27531 1.90316 1.18521 0.91927 0.83393 1.03869 1.20587 0.98526 0.91726 1.10159 1.19530 0.90669 0.96797 1.06143 1.18125 0.90958 0.88102 1.06682 1.41444 1.05058 1.06348 1.67973 0.76406 1.21069 0.85043 0.94956 1.06807 1.19213 0.90835 0.91211 1.02355 1.17099 0.87386 0.94361 0.89947 1.20462 1.43374 0.99869 0.89084 0.92148 1.24940 0.94520 0.94662 0.98627 1.70080 1.38271 1.16771 1.24269 0.86695 0.77804 0.80782 0.83337 1.20775 1.21362 1.19832 1.23029 0.98248 0.95957 1.07267 1.22882 1.05842 0.96954 0.98533 1.18721 0.93314 0.90544 1.01609 1.19718 0.90249 0.97724 1.02565 0.93437 0.93479 0.89243 0.86526 0.87318 0.83153 0.93371 0.91753 0.90394 0.90546 0.91347 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.32 -5.86 10.49 -19.72 -0.21 -6.07 16 3 C 0.07 1.35 6.68 -39.27 -0.26 1.08 16 4 C -0.19 -3.34 9.01 -39.40 -0.36 -3.69 16 5 C -0.11 -1.96 10.06 -39.47 -0.40 -2.36 16 6 C 0.07 1.39 7.27 -83.92 -0.61 0.78 16 7 N -0.60 -11.24 6.08 -10.63 -0.06 -11.30 16 8 H 0.40 5.86 8.96 -40.82 -0.37 5.49 16 9 C 0.04 0.93 10.62 -16.74 -0.18 0.75 16 10 C -0.03 -0.70 3.37 -102.71 -0.35 -1.05 16 11 C 0.11 2.79 2.36 -156.81 -0.37 2.42 16 12 C -0.49 -13.34 9.05 -34.44 -0.31 -13.65 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.08 2.10 5.39 -17.82 -0.10 2.01 16 15 N -0.86 -23.67 10.92 55.43 0.61 -23.06 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 C -0.21 -4.57 9.74 -26.69 -0.26 -4.83 16 21 C -0.20 -4.49 9.94 -26.69 -0.27 -4.75 16 22 C -0.04 -0.84 6.35 -105.14 -0.67 -1.51 16 23 C -0.08 -1.89 10.03 -39.12 -0.39 -2.28 16 24 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 25 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.12 1.66 6.26 -52.49 -0.33 1.33 16 28 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.15 2.94 7.94 -52.49 -0.42 2.53 16 30 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 31 H 0.06 1.30 7.79 -51.93 -0.40 0.90 16 32 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -30.14 299.09 -8.09 -38.24 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.39 Total: 6.99 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -3.52 Total: -25.66 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.54 Total: -34.37 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.21 Total: -6.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.14 -8.09 -38.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527392423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.100 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds