Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35994 * 117.00256 * 2 1 4 4 C 1.39270 * 119.86281 * 359.97438 * 3 2 1 5 5 C 1.37676 * 120.61724 * 179.72989 * 4 3 2 6 6 C 1.39099 * 119.99788 * 0.53552 * 5 4 3 7 7 N 1.37901 * 133.35945 * 179.81241 * 6 5 4 8 8 H 0.97005 * 125.07098 * 359.69051 * 7 6 5 9 9 C 1.36800 * 109.85481 * 179.70948 * 7 6 5 10 10 C 1.34250 * 109.93370 * 359.97438 * 9 7 6 11 11 C 1.50693 * 126.48904 * 179.97438 * 10 9 7 12 12 C 1.50700 * 115.55565 * 114.40261 * 11 10 9 13 13 H 1.07997 * 120.00184 * 144.31642 * 12 11 10 14 14 C 1.37881 * 119.99706 * 324.32150 * 12 11 10 15 15 N 1.31520 * 119.99965 * 3.04061 * 14 12 11 16 16 Si 1.86794 * 120.00248 * 183.04127 * 14 12 11 17 17 H 1.48496 * 109.47105 * 89.99664 * 16 14 12 18 18 H 1.48495 * 109.47350 * 209.99996 * 16 14 12 19 19 H 1.48510 * 109.46865 * 329.99789 * 16 14 12 20 20 C 1.53008 * 117.49831 * 328.72838 * 11 10 9 21 21 C 1.53006 * 117.49655 * 260.07054 * 11 10 9 22 22 C 1.40616 * 119.51975 * 359.48804 * 6 5 4 23 23 C 1.38037 * 119.86537 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.47439 * 299.99953 * 1 2 3 25 25 H 1.09006 * 109.47129 * 59.99743 * 1 2 3 26 26 H 1.08997 * 109.47464 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.68746 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.00371 * 180.02562 * 5 4 3 29 29 H 1.07995 * 125.03582 * 180.02562 * 9 7 6 30 30 H 0.96993 * 119.99828 * 175.00915 * 15 14 12 31 31 H 1.09000 * 117.49514 * 0.02562 * 20 11 10 32 32 H 1.09005 * 117.49636 * 145.02103 * 20 11 10 33 33 H 1.08999 * 117.49798 * 214.97766 * 21 11 10 34 34 H 1.08991 * 117.50114 * 0.02562 * 21 11 10 35 35 H 1.08001 * 120.20062 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2851 2.3779 -0.0005 5 6 1.8940 3.6127 0.0050 6 6 3.2820 3.7037 0.0000 7 7 4.1612 4.7661 0.0001 8 1 3.9049 5.7017 -0.0002 9 6 5.4487 4.3038 0.0002 10 6 5.4529 2.9613 0.0008 11 6 6.6672 2.0690 0.0005 12 6 6.8592 1.2319 1.2389 13 1 7.2659 0.2347 1.1589 14 6 6.5153 1.7393 2.4740 15 7 5.9645 2.9300 2.5656 16 14 6.8317 0.7354 4.0171 17 1 8.1853 1.0477 4.5419 18 1 5.8130 1.0715 5.0439 19 1 6.7484 -0.7113 3.6922 20 6 7.9231 2.5852 -0.7049 21 6 7.0972 1.4616 -1.3363 22 6 4.0534 2.5281 0.0002 23 6 3.4250 1.2806 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2071 2.3130 -0.0014 28 1 1.2940 4.5108 0.0050 29 1 6.3310 4.9265 0.0007 30 1 5.6565 3.2570 3.4252 31 1 7.8709 3.5704 -1.1683 32 1 8.8880 2.3190 -0.2733 33 1 7.5193 0.4567 -1.3200 34 1 6.5021 1.7077 -2.2156 35 1 4.0142 0.3755 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527392423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = 34.859266 kcal Electronic energy + Delta-G solvation = -19007.897778 eV Core-core repulsion = 16165.096196 eV Total energy + Delta-G solvation = -2842.801581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84231 -39.97906 -37.90875 -36.22999 -34.02909 -32.36083 -29.87445 -29.17353 -27.58747 -27.47000 -23.66800 -23.09805 -22.73407 -21.96710 -20.02773 -19.00718 -18.25408 -17.37252 -16.83683 -16.55413 -16.41662 -16.10641 -15.46297 -14.93927 -14.61973 -14.45749 -14.11713 -13.49178 -13.41222 -13.39108 -12.89181 -12.80651 -12.70875 -12.58335 -12.30839 -12.03830 -11.68223 -11.25940 -11.18056 -10.95511 -10.65296 -10.22011 -9.90237 -8.60708 -8.25432 -7.55951 -6.04662 0.42598 0.94923 1.39793 1.42452 1.50393 2.30411 2.48074 2.55647 2.73804 3.13287 3.20032 3.77341 4.01900 4.17407 4.34782 4.45463 4.50958 4.51765 4.64544 4.66309 4.77336 4.78888 4.82763 5.01542 5.08036 5.19883 5.23976 5.28621 5.54312 5.61097 5.66479 5.76727 5.83444 5.97723 6.34754 6.42198 6.60272 6.77454 6.94663 7.17206 7.54338 9.03597 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.008722 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.293938 B = 3209.336084 C = 3795.848237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.073 3.927 4 C -0.186 4.186 5 C -0.097 4.097 6 C 0.053 3.947 7 N -0.587 5.587 8 H 0.422 0.578 9 C 0.051 3.949 10 C -0.066 4.066 11 C 0.082 3.918 12 C -0.510 4.510 13 H 0.044 0.956 14 C 0.039 3.961 15 N -0.869 5.869 16 Si 0.935 3.065 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.193 4.193 21 C -0.196 4.196 22 C -0.068 4.068 23 C -0.128 4.128 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.251 0.749 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.263 3.479 -5.345 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.263 6.263 3 C 0.027 3.973 4 C -0.205 4.205 5 C -0.118 4.118 6 C -0.054 4.054 7 N -0.193 5.193 8 H 0.260 0.740 9 C -0.074 4.074 10 C -0.073 4.073 11 C 0.081 3.919 12 C -0.548 4.548 13 H 0.062 0.938 14 C -0.164 4.164 15 N -0.504 5.504 16 Si 0.762 3.238 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.231 4.231 21 C -0.233 4.233 22 C -0.074 4.074 23 C -0.147 4.147 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.176 0.824 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.193 3.598 -5.192 11.991 hybrid contribution 0.298 -0.281 1.157 1.228 sum -9.895 3.317 -4.034 11.188 Atomic orbital electron populations 1.23251 0.76972 1.05026 1.02007 1.86021 1.23139 1.27104 1.90013 1.18642 0.91279 0.84985 1.02353 1.21012 1.00391 0.90550 1.08583 1.20039 0.89780 0.98548 1.03389 1.18398 0.92087 0.87543 1.07414 1.41311 1.03940 1.07182 1.66881 0.73965 1.21195 0.86367 0.94419 1.05410 1.19248 0.90839 0.92211 1.05012 1.17195 0.89180 0.95682 0.89856 1.20672 1.43518 0.99688 0.90876 0.93799 1.25452 0.94682 0.95687 1.00539 1.70202 1.38760 1.17414 1.24049 0.85933 0.77798 0.79413 0.80687 1.20016 1.21387 1.20242 1.22991 0.96993 0.96879 1.06234 1.22854 1.05532 0.96956 0.97985 1.18954 0.93799 0.91742 1.02903 1.19657 0.91782 0.96776 1.06510 0.92226 0.91540 0.86799 0.82437 0.83075 0.81927 0.93956 0.89719 0.90847 0.90762 0.90304 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.35 -12.33 10.49 -93.49 -0.98 -13.31 16 3 C 0.07 2.85 6.68 22.47 0.15 3.00 16 4 C -0.19 -5.93 9.01 22.39 0.20 -5.73 16 5 C -0.10 -3.11 10.06 22.34 0.22 -2.89 16 6 C 0.05 2.07 7.27 38.98 0.28 2.35 16 7 N -0.59 -20.77 6.08 -187.53 -1.14 -21.91 16 8 H 0.42 11.11 8.96 -92.70 -0.83 10.28 16 9 C 0.05 2.10 10.62 83.01 0.88 2.98 16 10 C -0.07 -3.19 3.37 -18.62 -0.06 -3.26 16 11 C 0.08 4.15 2.36 -53.67 -0.13 4.02 16 12 C -0.51 -28.77 9.05 25.60 0.23 -28.54 16 13 H 0.04 2.52 7.81 -2.91 -0.02 2.49 16 14 C 0.04 2.18 5.39 84.65 0.46 2.64 16 15 N -0.87 -48.49 10.92 21.45 0.23 -48.26 16 16 Si 0.93 44.86 29.54 68.60 2.03 46.88 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 C -0.19 -8.55 9.74 30.62 0.30 -8.25 16 21 C -0.20 -8.78 9.94 30.62 0.30 -8.47 16 22 C -0.07 -3.22 6.35 -20.20 -0.13 -3.35 16 23 C -0.13 -6.01 10.03 22.57 0.23 -5.78 16 24 H 0.06 1.18 7.65 -2.39 -0.02 1.17 16 25 H 0.07 1.22 7.65 -2.38 -0.02 1.20 16 26 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.16 3.66 6.26 -2.91 -0.02 3.64 16 28 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.16 6.18 7.94 -2.91 -0.02 6.16 16 30 H 0.25 13.74 8.32 -92.71 -0.77 12.97 16 31 H 0.08 3.35 7.79 -2.39 -0.02 3.33 16 32 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -67.04 299.09 4.47 -62.57 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.27 Total: 23.70 kcal Atomic # 6 Polarization: -53.73 SS G_CDS: 4.05 Total: -49.68 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -0.91 Total: -70.17 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.98 Total: -13.31 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.04 4.47 -62.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527392423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.432 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds