Wall clock time and date at job start Mon Mar 30 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 110.91526 * 2 1 4 4 C 1.55032 * 110.81012 * 236.22597 * 2 1 3 5 5 C 1.53863 * 106.94618 * 199.54237 * 4 2 1 6 6 H 1.09000 * 109.60839 * 287.66939 * 5 4 2 7 7 N 1.46496 * 109.60837 * 167.33059 * 5 4 2 8 8 C 1.34779 * 119.99914 * 154.63890 * 7 5 4 9 9 O 1.21284 * 119.99695 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00395 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47242 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 C 1.54277 * 108.77759 * 47.50055 * 5 4 2 22 22 S 1.83094 * 104.65391 * 331.95976 * 21 5 4 23 23 H 1.09005 * 109.47352 * 297.84223 * 1 2 3 24 24 H 1.08999 * 109.47510 * 57.84669 * 1 2 3 25 25 H 1.08997 * 109.47093 * 177.85190 * 1 2 3 26 26 H 1.08997 * 109.82250 * 80.24338 * 4 2 1 27 27 H 1.08995 * 110.08911 * 318.98918 * 4 2 1 28 28 H 0.96994 * 120.00700 * 334.64005 * 7 5 4 29 29 H 1.08996 * 109.47390 * 60.00019 * 10 8 7 30 30 H 1.09001 * 109.46948 * 299.99661 * 10 8 7 31 31 H 1.09001 * 109.47502 * 60.00161 * 11 10 8 32 32 H 1.09001 * 109.47289 * 299.99957 * 11 10 8 33 33 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 34 34 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 35 35 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.40056 * 90.75149 * 21 5 4 37 37 H 1.08998 * 110.39934 * 213.16286 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0183 0.0000 4 6 2.0808 -0.8056 -1.2046 5 6 3.5367 -1.1740 -0.8698 6 1 4.1628 -0.2839 -0.9323 7 7 4.0191 -2.1820 -1.8170 8 6 5.3384 -2.2924 -2.0699 9 8 6.1261 -1.5575 -1.5127 10 6 5.8347 -3.3289 -3.0447 11 6 7.3588 -3.2437 -3.1478 12 6 7.8626 -4.2956 -4.1381 13 6 9.3639 -4.2121 -4.2391 14 1 9.9046 -3.4815 -3.6557 15 6 10.0471 -5.0677 -5.0771 16 7 9.3887 -5.9570 -5.7879 17 14 11.9079 -4.9637 -5.2029 18 1 12.5233 -5.8609 -4.1922 19 1 12.3363 -5.3815 -6.5619 20 1 12.3436 -3.5658 -4.9545 21 6 3.5879 -1.7435 0.5631 22 16 2.1832 -0.9489 1.4279 23 1 -0.3634 0.4800 0.9087 24 1 -0.3634 0.5469 -0.8700 25 1 -0.3633 -1.0269 -0.0385 26 1 2.0497 -0.1920 -2.1049 27 1 1.4918 -1.7111 -1.3502 28 1 3.3892 -2.7699 -2.2624 29 1 5.3932 -3.1470 -4.0245 30 1 5.5494 -4.3215 -2.6962 31 1 7.8000 -3.4259 -2.1679 32 1 7.6445 -2.2511 -3.4960 33 1 7.5769 -5.2883 -3.7902 34 1 7.4214 -4.1130 -5.1178 35 1 9.8692 -6.5586 -6.3777 36 1 3.4605 -2.8260 0.5465 37 1 4.5294 -1.4782 1.0440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594042152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:23 Heat of formation + Delta-G solvation = -68.384273 kcal Electronic energy + Delta-G solvation = -16549.727653 eV Core-core repulsion = 13837.893047 eV Total energy + Delta-G solvation = -2711.834606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82237 -37.10261 -34.23199 -33.91027 -32.11652 -30.87132 -27.80495 -27.09151 -24.26136 -22.81342 -21.26177 -20.63002 -19.78505 -17.28213 -16.64709 -16.56277 -16.02335 -15.58760 -15.02450 -14.45360 -14.22508 -14.07967 -13.62935 -13.43063 -13.10264 -12.71101 -12.29468 -12.16960 -11.95136 -11.75064 -11.64033 -11.39288 -11.24864 -10.81820 -10.63472 -10.54498 -10.35971 -9.76437 -9.70459 -9.29718 -9.18758 -9.03775 -8.33189 -7.97736 -5.98847 -4.00335 1.44722 2.01345 2.81144 3.14144 3.34188 3.40039 3.44847 4.13769 4.24917 4.46187 4.48582 4.63552 4.73137 4.88233 5.06272 5.16277 5.22612 5.32922 5.37327 5.43994 5.57747 5.61797 5.67215 5.68407 5.73604 6.20773 6.31099 6.69536 6.90026 7.13604 7.46097 7.69275 7.81723 8.01666 8.33618 8.45603 9.06788 9.63788 11.12691 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.062367 B = 0.003040 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.847432 B = 9206.873098 C = 9396.793722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 H 0.101 0.899 4 C -0.134 4.134 5 C 0.140 3.860 6 H 0.100 0.900 7 N -0.733 5.733 8 C 0.514 3.486 9 O -0.533 6.533 10 C -0.138 4.138 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.083 4.083 22 S -0.290 6.290 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.402 0.598 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.097 0.903 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.967 9.571 9.216 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.170 4.170 3 H 0.119 0.881 4 C -0.173 4.173 5 C 0.033 3.967 6 H 0.118 0.882 7 N -0.387 5.387 8 C 0.302 3.698 9 O -0.408 6.408 10 C -0.178 4.178 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.232 4.232 22 S -0.065 6.065 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.236 0.764 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.694 9.890 10.624 24.465 hybrid contribution 1.127 -0.300 -1.434 1.848 sum -18.567 9.590 9.190 22.829 Atomic orbital electron populations 1.21691 0.91546 1.03253 1.02589 1.23872 0.99334 1.00772 0.92981 0.88063 1.22860 0.94560 1.01265 0.98588 1.21696 0.95230 0.92924 0.86867 0.88203 1.46175 1.08473 1.38120 1.45893 1.21377 0.81185 0.84832 0.82388 1.90688 1.54816 1.44271 1.51059 1.21857 1.00905 0.97183 0.97838 1.21455 0.89351 1.01289 1.01240 1.19130 0.95860 0.93163 0.93511 1.21271 0.92317 1.17673 1.24407 0.92577 1.25018 0.98435 0.95407 0.95648 1.69956 1.35502 1.20828 1.27477 0.86591 0.85782 0.78411 0.77227 1.20656 1.21249 1.19834 1.24513 0.98705 1.03182 0.96808 1.87680 1.37211 1.59946 1.21646 0.91701 0.91168 0.91357 0.89003 0.89514 0.76358 0.89239 0.89232 0.92680 0.92691 0.96606 0.96598 0.93049 0.88472 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.38 37.16 0.35 -0.40 16 2 C -0.04 -0.30 3.84 -25.66 -0.10 -0.40 16 3 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 4 C -0.13 -0.93 5.37 -25.21 -0.14 -1.07 16 5 C 0.14 1.39 2.89 -66.81 -0.19 1.19 16 6 H 0.10 1.19 7.56 -51.93 -0.39 0.79 16 7 N -0.73 -7.76 5.05 -52.72 -0.27 -8.03 16 8 C 0.51 7.75 7.81 -10.99 -0.09 7.67 16 9 O -0.53 -10.20 15.64 5.55 0.09 -10.12 16 10 C -0.14 -2.18 5.70 -27.89 -0.16 -2.34 16 11 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 21 C -0.08 -0.87 6.98 37.83 0.26 -0.61 16 22 S -0.29 -2.96 22.72 -107.50 -2.44 -5.40 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.40 8.12 -51.93 -0.42 -0.03 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 28 H 0.40 3.11 8.60 -40.82 -0.35 2.76 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.10 -51.93 -0.42 0.79 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 36 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -32.94 319.43 -9.01 -41.94 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.19 Total: -2.41 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.73 Total: -11.48 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.47 Total: -34.33 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.44 Total: -5.40 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.94 -9.01 -41.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594042152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.440 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds