Wall clock time and date at job start Mon Mar 30 2020 07:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86806 * 120.00006 * 2 1 4 4 H 1.48498 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46948 * 299.99647 * 3 2 1 6 6 H 1.48495 * 109.46910 * 59.99944 * 3 2 1 7 7 C 1.39947 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99719 * 197.87068 * 7 2 1 9 9 C 1.41398 * 119.99970 * 17.86728 * 7 2 1 10 10 C 1.40710 * 120.24376 * 24.38222 * 9 7 2 11 11 C 1.37614 * 119.74531 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24717 * 0.02799 * 11 10 9 13 13 C 1.50706 * 119.74818 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.47322 * 90.00064 * 13 12 11 15 15 C 1.47073 * 110.99919 * 291.65007 * 14 13 12 16 16 C 1.53589 * 107.95798 * 236.18318 * 15 14 13 17 17 H 1.08993 * 114.85185 * 215.10679 * 16 15 14 18 18 C 1.53614 * 113.85008 * 77.15019 * 16 15 14 19 19 C 1.55495 * 87.33977 * 230.23347 * 18 16 15 20 20 C 1.53777 * 86.70762 * 25.29587 * 19 18 16 21 21 H 1.09006 * 116.39843 * 215.75990 * 20 19 18 22 22 C 1.47157 * 111.00335 * 169.99901 * 14 13 12 23 23 C 1.38640 * 120.50547 * 0.24808 * 12 11 10 24 24 C 1.37616 * 120.24058 * 359.44587 * 23 12 11 25 25 H 0.97002 * 120.00216 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.12856 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.87584 * 180.02562 * 11 10 9 28 28 H 1.08997 * 109.47057 * 329.99684 * 13 12 11 29 29 H 1.09000 * 109.47009 * 209.99723 * 13 12 11 30 30 H 1.08997 * 109.77508 * 116.55339 * 15 14 13 31 31 H 1.09005 * 109.76882 * 355.80276 * 15 14 13 32 32 H 1.09001 * 113.56748 * 344.70742 * 18 16 15 33 33 H 1.08997 * 113.57495 * 115.48264 * 18 16 15 34 34 H 1.08996 * 113.45366 * 270.98110 * 19 18 16 35 35 H 1.08994 * 114.20613 * 139.71486 * 19 18 16 36 36 H 1.09006 * 110.01261 * 21.50626 * 22 14 13 37 37 H 1.09004 * 110.01666 * 260.12384 * 22 14 13 38 38 H 1.07994 * 119.87642 * 179.70492 * 23 12 11 39 39 H 1.08006 * 120.12776 * 180.27288 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2876 9 6 1.3520 -2.4072 -0.3746 10 6 0.2209 -2.3626 -1.2104 11 6 -0.4098 -3.5320 -1.5687 12 6 0.0650 -4.7507 -1.1090 13 6 -0.6347 -6.0244 -1.5079 14 7 -0.0438 -6.5394 -2.7503 15 6 -0.3522 -5.6571 -3.8859 16 6 -1.0473 -6.5000 -4.9653 17 1 -0.8088 -6.2181 -5.9908 18 6 -2.5226 -6.8027 -4.6628 19 6 -2.2012 -8.2957 -4.9553 20 6 -0.7497 -7.9671 -4.5679 21 1 0.0301 -8.4846 -5.1268 22 6 -0.5329 -7.8957 -3.0444 23 6 1.1752 -4.8062 -0.2804 24 6 1.8254 -3.6499 0.0856 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1509 -1.4142 -1.5694 27 1 -1.2778 -3.5003 -2.2105 28 1 -1.6942 -5.8228 -1.6658 29 1 -0.5198 -6.7653 -0.7167 30 1 0.5696 -5.2340 -4.2851 31 1 -1.0153 -4.8555 -3.5604 32 1 -2.8025 -6.6143 -3.6263 33 1 -3.2145 -6.3556 -5.3765 34 1 -2.3215 -8.5680 -6.0038 35 1 -2.6851 -8.9982 -4.2769 36 1 -1.4745 -8.0736 -2.5248 37 1 0.2080 -8.6342 -2.7380 38 1 1.5335 -5.7607 0.0757 39 1 2.6927 -3.6956 0.7276 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688311592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:13 Heat of formation + Delta-G solvation = 40.008544 kcal Electronic energy + Delta-G solvation = -18726.890875 eV Core-core repulsion = 16020.145677 eV Total energy + Delta-G solvation = -2706.745197 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52453 -37.60112 -35.03750 -33.43436 -30.38289 -29.42459 -28.95434 -27.58495 -25.30994 -23.73256 -23.07639 -21.19040 -20.51337 -19.72720 -18.65286 -17.25798 -16.40613 -15.27745 -15.16130 -14.52094 -14.08055 -13.93176 -13.85031 -13.23666 -12.97844 -12.72977 -12.27894 -12.01727 -11.93180 -11.89833 -11.68941 -11.45250 -11.13488 -10.95813 -10.74585 -10.58374 -10.44676 -10.29255 -10.13211 -9.99710 -9.51234 -9.32008 -9.09174 -7.83453 -7.39714 -7.24490 -6.73348 -4.30950 2.76432 3.08628 3.13045 3.14438 3.20211 3.95503 4.31123 4.37550 4.57552 4.65535 4.74293 4.91105 5.27622 5.44728 5.51716 5.59304 5.63712 5.74122 5.78888 5.82608 5.87583 5.94064 6.02212 6.10098 6.26940 6.31870 6.35029 6.45140 6.48029 6.54161 6.98654 7.11045 7.29857 7.42069 7.47854 7.54554 7.66503 7.93826 8.09975 8.18850 8.34795 8.68326 8.93860 9.02391 10.21345 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.040389 B = 0.004374 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.089409 B = 6399.450541 C = 6731.629098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.093 4.093 12 C -0.206 4.206 13 C 0.117 3.883 14 N -0.521 5.521 15 C 0.056 3.944 16 C -0.131 4.131 17 H 0.100 0.900 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.122 4.122 21 H 0.087 0.913 22 C 0.058 3.942 23 C -0.070 4.070 24 C -0.228 4.228 25 H 0.279 0.721 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 -10.140 -7.662 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.208 4.208 13 C -0.010 4.010 14 N -0.245 5.245 15 C -0.072 4.072 16 C -0.150 4.150 17 H 0.118 0.882 18 C -0.172 4.172 19 C -0.169 4.169 20 C -0.141 4.141 21 H 0.106 0.894 22 C -0.069 4.069 23 C -0.089 4.089 24 C -0.247 4.247 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.769 -9.994 -7.543 13.076 hybrid contribution -0.534 0.861 -0.063 1.015 sum -4.303 -9.133 -7.606 12.640 Atomic orbital electron populations 1.69838 1.07586 1.28985 1.35618 1.25897 0.94684 1.01250 0.92253 0.86308 0.81081 0.81104 0.78503 1.18399 1.19742 1.20048 1.19628 0.98151 0.91322 1.40224 0.90486 1.17616 0.91051 0.92005 0.88395 1.21266 0.99401 0.96613 1.01250 1.20510 0.98412 0.92882 0.99404 1.18841 1.01623 0.92251 1.08036 1.20905 0.94240 0.95306 0.90514 1.63309 1.57690 1.00584 1.02944 1.22477 0.99561 0.95240 0.89894 1.23615 0.95814 0.95519 1.00057 0.88165 1.23170 0.96217 0.96095 1.01681 1.23119 0.96065 0.96560 1.01157 1.23400 0.96918 0.97307 0.96484 0.89427 1.22555 0.98538 0.92566 0.93276 1.20316 0.94960 0.96237 0.97400 1.20964 1.03690 0.92985 1.07098 0.91031 0.86605 0.89984 0.95798 0.91918 0.90946 0.91901 0.90365 0.91521 0.90236 0.91535 0.93879 0.90897 0.89550 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.75 10.95 55.55 0.61 -20.14 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 9 C 0.11 3.03 5.58 -106.83 -0.60 2.43 16 10 C -0.17 -4.35 8.70 -38.88 -0.34 -4.69 16 11 C -0.09 -2.18 8.64 -39.66 -0.34 -2.52 16 12 C -0.21 -4.53 5.10 -104.33 -0.53 -5.06 16 13 C 0.12 2.12 4.69 -4.97 -0.02 2.10 16 14 N -0.52 -8.72 5.11 -234.64 -1.20 -9.92 16 15 C 0.06 0.89 5.76 -3.42 -0.02 0.87 16 16 C -0.13 -1.64 4.96 -89.00 -0.44 -2.09 16 17 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.13 -1.54 7.28 -25.09 -0.18 -1.72 16 19 C -0.13 -1.32 7.64 -25.00 -0.19 -1.51 16 20 C -0.12 -1.43 5.16 -88.68 -0.46 -1.89 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 22 C 0.06 0.79 5.96 -3.14 -0.02 0.77 16 23 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16 24 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16 25 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 26 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 27 H 0.08 1.75 6.88 -52.49 -0.36 1.39 16 28 H 0.02 0.42 7.89 -51.93 -0.41 0.01 16 29 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.08 5.36 -51.93 -0.28 0.80 16 32 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.04 0.56 6.98 -51.93 -0.36 0.20 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -27.32 308.17 -11.21 -38.53 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.89 Total: 5.47 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -4.34 Total: -32.40 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: -0.59 Total: -30.06 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.32 -11.21 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688311592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.541 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds