Wall clock time and date at job start Mon Mar 30 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46701 * 2 1 4 4 C 1.52995 * 109.46963 * 240.00490 * 2 1 3 5 5 C 1.50696 * 109.47203 * 174.99952 * 4 2 1 6 6 H 1.08003 * 120.00225 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47285 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47160 * 119.99796 * 9 7 5 12 12 H 1.48506 * 109.47097 * 239.99672 * 9 7 5 13 13 O 1.42895 * 109.47152 * 119.99768 * 2 1 3 14 14 C 1.35837 * 117.00636 * 275.20957 * 13 2 1 15 15 C 1.36605 * 120.17801 * 5.52185 * 14 13 2 16 16 C 1.39200 * 121.00315 * 179.97438 * 15 14 13 17 17 C 1.36199 * 120.94117 * 0.06836 * 16 15 14 18 18 C 1.40419 * 119.72820 * 359.97426 * 17 16 15 19 19 C 1.40786 * 121.36206 * 179.97438 * 18 17 16 20 20 C 1.36569 * 118.14713 * 180.02562 * 19 18 17 21 21 C 1.39340 * 119.92105 * 359.96245 * 20 19 18 22 22 N 1.31080 * 121.75019 * 0.02562 * 21 20 19 23 23 C 1.33605 * 121.32037 * 0.02562 * 22 21 20 24 24 H 1.09010 * 109.47155 * 299.99489 * 1 2 3 25 25 H 1.08993 * 109.47756 * 59.99475 * 1 2 3 26 26 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47001 * 294.99353 * 4 2 1 28 28 H 1.09003 * 109.47418 * 54.99403 * 4 2 1 29 29 H 0.97005 * 119.99465 * 180.02562 * 8 7 5 30 30 H 1.07994 * 119.49862 * 0.04563 * 15 14 13 31 31 H 1.08002 * 119.52597 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.13954 * 179.97438 * 17 16 15 33 33 H 1.07999 * 120.92272 * 0.02562 * 19 18 17 34 34 H 1.08000 * 120.03777 * 179.97438 * 20 19 18 35 35 H 1.08010 * 119.12398 * 180.29378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2302 -1.1924 -2.3585 8 7 3.5762 -1.8367 -3.3002 9 14 6.0918 -1.0600 -2.4376 10 1 6.5835 -0.2898 -1.2670 11 1 6.6861 -2.4209 -2.4203 12 1 6.4858 -0.3636 -3.6886 13 8 2.0063 -0.6736 1.1668 14 6 2.1083 0.0612 2.3047 15 6 1.6584 1.3507 2.3321 16 6 1.7540 2.1190 3.4890 17 6 2.3003 1.6068 4.6266 18 6 2.7748 0.2853 4.6374 19 6 3.3462 -0.2787 5.7939 20 6 3.7868 -1.5698 5.7309 21 6 3.6629 -2.2894 4.5442 22 7 3.1300 -1.7608 3.4695 23 6 2.6804 -0.5027 3.4641 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.7517 -1.7714 -1.2056 28 1 1.6053 -0.2616 -2.1370 29 1 4.0606 -2.2433 -4.0357 30 1 1.2210 1.7803 1.4431 31 1 1.3903 3.1359 3.4841 32 1 2.3684 2.2146 5.5168 33 1 3.4337 0.2939 6.7055 34 1 4.2306 -2.0326 6.6000 35 1 4.0113 -3.3112 4.5101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:32 Heat of formation + Delta-G solvation = 8.622297 kcal Electronic energy + Delta-G solvation = -18479.551637 eV Core-core repulsion = 15635.612336 eV Total energy + Delta-G solvation = -2843.939302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78272 -38.73067 -36.29914 -33.70588 -32.69412 -31.47738 -30.33223 -28.92288 -27.43821 -24.19543 -23.56872 -23.31535 -21.76960 -20.26121 -17.87102 -17.75367 -16.74541 -16.33207 -15.80974 -14.91480 -14.73367 -14.37875 -14.22017 -13.75862 -13.51508 -13.08853 -12.92093 -12.52340 -11.96191 -11.84839 -11.70625 -11.62723 -11.37334 -11.17125 -10.85347 -10.74637 -10.48606 -10.14772 -9.76920 -9.37783 -9.23308 -9.05186 -8.67089 -8.35548 -7.42806 -5.98520 -3.99101 0.68360 0.94031 2.22574 3.13511 3.34313 3.41593 3.47565 3.72522 4.31018 4.45426 4.49687 4.77883 4.96077 5.01929 5.05633 5.27524 5.35496 5.39321 5.44484 5.62356 5.71594 5.77090 5.90069 5.99269 6.09370 6.16821 6.21948 6.40616 6.56469 6.61160 6.65499 6.76304 6.94452 7.48588 7.60540 7.98072 7.99525 8.25952 8.39543 9.04073 9.64001 11.13080 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006364 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.648031 B = 4398.897151 C = 5112.662925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 H 0.064 0.936 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 O -0.264 6.264 14 C 0.190 3.810 15 C -0.237 4.237 16 C -0.059 4.059 17 C -0.167 4.167 18 C -0.063 4.063 19 C -0.078 4.078 20 C -0.163 4.163 21 C 0.102 3.898 22 N -0.432 5.432 23 C 0.100 3.900 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 5.400 17.074 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 H 0.082 0.918 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.211 1.211 13 O -0.175 6.175 14 C 0.140 3.860 15 C -0.258 4.258 16 C -0.077 4.077 17 C -0.186 4.186 18 C -0.065 4.065 19 C -0.104 4.104 20 C -0.183 4.183 21 C -0.071 4.071 22 N -0.139 5.139 23 C -0.023 4.023 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.564 4.667 15.990 17.034 hybrid contribution 1.084 0.693 0.598 1.419 sum -2.480 5.360 16.588 17.608 Atomic orbital electron populations 1.22413 0.96787 1.02772 1.01526 1.23009 0.92019 0.97260 0.85175 0.91771 1.19269 0.96645 0.96614 0.88517 1.21134 0.91650 1.34330 1.07744 0.92673 1.24958 0.98418 0.95248 0.95682 1.69962 1.35418 1.36129 1.12146 0.86531 0.85869 0.77868 0.77761 1.19802 1.20918 1.21054 1.86402 1.78114 1.37445 1.15492 1.18745 0.90677 0.89931 0.86656 1.20984 1.09669 0.94480 1.00672 1.20610 0.95972 0.99126 0.91995 1.20652 1.04440 0.94310 0.99168 1.18584 0.99197 0.95174 0.93591 1.21327 0.96513 0.95358 0.97241 1.21901 1.01167 0.95513 0.99721 1.22938 0.95828 1.00251 0.88041 1.68062 1.06930 1.10712 1.28223 1.18266 1.01167 0.91022 0.91850 0.93240 0.91214 0.91800 0.95124 0.94256 0.93032 0.84497 0.85833 0.85750 0.84621 0.84850 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.17 37.16 0.34 -2.72 16 2 C 0.08 1.72 2.17 -26.73 -0.06 1.66 16 3 H 0.06 1.31 6.33 -51.93 -0.33 0.98 16 4 C 0.03 0.69 4.68 -27.89 -0.13 0.56 16 5 C -0.51 -14.84 8.88 -34.44 -0.31 -15.15 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 O -0.26 -6.02 9.35 -19.23 -0.18 -6.20 16 14 C 0.19 3.75 6.62 -39.11 -0.26 3.49 16 15 C -0.24 -3.89 8.19 -39.81 -0.33 -4.21 16 16 C -0.06 -0.79 9.95 -39.96 -0.40 -1.19 16 17 C -0.17 -2.16 9.77 -39.49 -0.39 -2.55 16 18 C -0.06 -0.96 5.74 -106.81 -0.61 -1.57 16 19 C -0.08 -0.93 9.90 -39.22 -0.39 -1.32 16 20 C -0.16 -1.87 10.03 -39.77 -0.40 -2.27 16 21 C 0.10 1.48 11.15 -17.46 -0.19 1.29 16 22 N -0.43 -8.34 10.13 -10.88 -0.11 -8.45 16 23 C 0.10 1.88 6.62 -84.73 -0.56 1.32 16 24 H 0.05 0.75 6.89 -51.92 -0.36 0.39 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.14 2.09 5.31 -52.49 -0.28 1.82 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -33.58 299.38 -8.15 -41.73 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.31 Total: -1.51 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.78 Total: -21.07 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.63 Total: -34.94 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.18 Total: -6.20 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.58 -8.15 -41.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.356 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds