Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46701 * 2 1 4 4 C 1.52995 * 109.46963 * 240.00490 * 2 1 3 5 5 C 1.50696 * 109.47203 * 174.99952 * 4 2 1 6 6 H 1.08003 * 120.00225 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47285 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47160 * 119.99796 * 9 7 5 12 12 H 1.48506 * 109.47097 * 239.99672 * 9 7 5 13 13 O 1.42895 * 109.47152 * 119.99768 * 2 1 3 14 14 C 1.35837 * 117.00636 * 275.20957 * 13 2 1 15 15 C 1.36605 * 120.17801 * 5.52185 * 14 13 2 16 16 C 1.39200 * 121.00315 * 179.97438 * 15 14 13 17 17 C 1.36199 * 120.94117 * 0.06836 * 16 15 14 18 18 C 1.40419 * 119.72820 * 359.97426 * 17 16 15 19 19 C 1.40786 * 121.36206 * 179.97438 * 18 17 16 20 20 C 1.36569 * 118.14713 * 180.02562 * 19 18 17 21 21 C 1.39340 * 119.92105 * 359.96245 * 20 19 18 22 22 N 1.31080 * 121.75019 * 0.02562 * 21 20 19 23 23 C 1.33605 * 121.32037 * 0.02562 * 22 21 20 24 24 H 1.09010 * 109.47155 * 299.99489 * 1 2 3 25 25 H 1.08993 * 109.47756 * 59.99475 * 1 2 3 26 26 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47001 * 294.99353 * 4 2 1 28 28 H 1.09003 * 109.47418 * 54.99403 * 4 2 1 29 29 H 0.97005 * 119.99465 * 180.02562 * 8 7 5 30 30 H 1.07994 * 119.49862 * 0.04563 * 15 14 13 31 31 H 1.08002 * 119.52597 * 180.02562 * 16 15 14 32 32 H 1.08001 * 120.13954 * 179.97438 * 17 16 15 33 33 H 1.07999 * 120.92272 * 0.02562 * 19 18 17 34 34 H 1.08000 * 120.03777 * 179.97438 * 20 19 18 35 35 H 1.08010 * 119.12398 * 180.29378 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2302 -1.1924 -2.3585 8 7 3.5762 -1.8367 -3.3002 9 14 6.0918 -1.0600 -2.4376 10 1 6.5835 -0.2898 -1.2670 11 1 6.6861 -2.4209 -2.4203 12 1 6.4858 -0.3636 -3.6886 13 8 2.0063 -0.6736 1.1668 14 6 2.1083 0.0612 2.3047 15 6 1.6584 1.3507 2.3321 16 6 1.7540 2.1190 3.4890 17 6 2.3003 1.6068 4.6266 18 6 2.7748 0.2853 4.6374 19 6 3.3462 -0.2787 5.7939 20 6 3.7868 -1.5698 5.7309 21 6 3.6629 -2.2894 4.5442 22 7 3.1300 -1.7608 3.4695 23 6 2.6804 -0.5027 3.4641 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.7517 -1.7714 -1.2056 28 1 1.6053 -0.2616 -2.1370 29 1 4.0606 -2.2433 -4.0357 30 1 1.2210 1.7803 1.4431 31 1 1.3903 3.1359 3.4841 32 1 2.3684 2.2146 5.5168 33 1 3.4337 0.2939 6.7055 34 1 4.2306 -2.0326 6.6000 35 1 4.0113 -3.3112 4.5101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = -12.735077 kcal Electronic energy + Delta-G solvation = -18480.477763 eV Core-core repulsion = 15635.612336 eV Total energy + Delta-G solvation = -2844.865427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.94263 -40.11231 -37.47288 -35.57139 -34.12074 -33.13524 -31.45728 -30.10391 -29.38762 -25.47019 -25.14879 -24.65461 -23.12975 -21.75277 -19.10953 -19.01698 -18.54831 -17.85128 -17.02143 -16.64563 -16.23857 -15.75624 -15.43454 -15.04943 -14.68840 -14.61679 -14.02616 -13.85912 -13.80907 -13.50003 -13.36722 -12.91041 -12.81703 -12.69020 -12.55554 -12.38023 -12.07839 -11.84576 -11.33815 -11.27549 -10.82516 -10.62590 -10.35649 -9.76653 -8.65471 -8.24918 -6.33428 -0.38131 -0.15116 1.12165 1.32115 1.34092 1.46786 2.06001 2.34824 2.36465 3.09086 3.17931 3.38159 3.83507 3.89840 3.97386 4.02105 4.12103 4.15726 4.24791 4.39224 4.42440 4.52191 4.69581 4.77369 4.94901 4.97451 5.11291 5.12941 5.15746 5.31129 5.39037 5.43632 5.52509 5.65589 5.72247 5.93021 6.15157 6.59508 6.77121 7.11383 7.33512 8.87218 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006364 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.648031 B = 4398.897151 C = 5112.662925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.528 4.528 6 H 0.043 0.957 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.268 1.268 13 O -0.306 6.306 14 C 0.133 3.867 15 C -0.228 4.228 16 C -0.071 4.071 17 C -0.143 4.143 18 C -0.084 4.084 19 C -0.066 4.066 20 C -0.158 4.158 21 C 0.097 3.903 22 N -0.503 5.503 23 C 0.065 3.935 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.052 0.948 27 H -0.005 1.005 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.180 0.820 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 7.355 20.410 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.567 4.567 6 H 0.062 0.938 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.193 1.193 13 O -0.218 6.218 14 C 0.086 3.914 15 C -0.249 4.249 16 C -0.089 4.089 17 C -0.161 4.161 18 C -0.086 4.086 19 C -0.092 4.092 20 C -0.178 4.178 21 C -0.075 4.075 22 N -0.211 5.211 23 C -0.056 4.056 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.013 0.987 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.197 0.803 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.712 6.640 19.340 20.627 hybrid contribution 0.850 0.061 -0.246 0.887 sum -1.862 6.700 19.094 20.321 Atomic orbital electron populations 1.22297 0.93856 1.02675 1.03429 1.22685 0.94211 0.96163 0.83600 0.91427 1.19101 0.95488 0.94971 0.91113 1.21412 0.93305 1.34418 1.07516 0.93826 1.25839 1.03486 0.94782 0.95258 1.70068 1.37398 1.36767 1.12731 0.85486 0.79792 0.78089 0.78218 1.19782 1.20325 1.19257 1.86285 1.79977 1.38928 1.16646 1.19187 0.94435 0.91557 0.86265 1.21232 1.08146 0.93420 1.02101 1.21024 0.96336 1.00554 0.90996 1.21224 1.01117 0.93437 1.00365 1.19008 1.00046 0.96049 0.93477 1.21910 0.94118 0.95647 0.97494 1.22321 1.00280 0.95432 0.99719 1.23521 0.94251 1.01365 0.88375 1.67983 1.10025 1.12070 1.31057 1.18624 1.02208 0.91746 0.93032 0.90874 0.89555 0.92905 0.98685 0.95236 0.92591 0.84238 0.81961 0.81187 0.79875 0.80281 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 9.17 71.98 0.66 -5.23 16 2 C 0.09 4.01 2.17 30.59 0.07 4.08 16 3 H 0.07 2.91 6.33 -2.39 -0.02 2.89 16 4 C 0.03 1.68 4.68 29.85 0.14 1.82 16 5 C -0.53 -32.32 8.88 25.60 0.23 -32.09 16 6 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 7 C 0.00 0.25 5.46 84.65 0.46 0.71 16 8 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 9 Si 0.96 47.30 29.54 68.60 2.03 49.32 16 10 H -0.27 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 O -0.31 -14.97 9.35 -91.72 -0.86 -15.83 16 14 C 0.13 5.50 6.62 22.58 0.15 5.64 16 15 C -0.23 -7.44 8.19 22.12 0.18 -7.25 16 16 C -0.07 -1.70 9.95 22.03 0.22 -1.49 16 17 C -0.14 -3.14 9.77 22.33 0.22 -2.92 16 18 C -0.08 -2.34 5.74 -21.28 -0.12 -2.46 16 19 C -0.07 -1.30 9.90 22.50 0.22 -1.07 16 20 C -0.16 -3.10 10.03 22.14 0.22 -2.88 16 21 C 0.10 2.78 11.15 85.07 0.95 3.73 16 22 N -0.50 -20.27 10.13 -188.34 -1.91 -22.18 16 23 C 0.07 2.52 6.62 40.41 0.27 2.79 16 24 H 0.07 2.23 6.89 -2.38 -0.02 2.21 16 25 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H -0.01 -0.33 8.14 -2.38 -0.02 -0.34 16 28 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 30 H 0.14 4.26 5.31 -2.91 -0.02 4.25 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -79.94 299.38 4.49 -75.45 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.09 Total: 7.89 kcal Atomic # 6 Polarization: -40.49 SS G_CDS: 3.86 Total: -36.62 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.62 Total: -80.21 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.86 Total: -15.83 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.94 4.49 -75.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.712 kcal (2) G-P(sol) polarization free energy of solvation -79.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds