Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47320 * 89.99850 * 9 7 5 11 11 H 1.48505 * 109.47486 * 209.99782 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99955 * 9 7 5 13 13 S 1.81405 * 109.47264 * 119.99579 * 2 1 3 14 14 C 1.81397 * 103.00221 * 295.00358 * 13 2 1 15 15 C 1.50698 * 109.47159 * 179.97438 * 14 13 2 16 16 O 1.21277 * 120.00027 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99841 * 179.97438 * 15 14 13 18 18 C 1.47025 * 125.65198 * 359.69892 * 17 15 14 19 19 C 1.54312 * 107.27915 * 180.96555 * 18 17 15 20 20 C 1.55161 * 102.86303 * 22.52579 * 19 18 17 21 21 C 1.47425 * 125.64961 * 179.97438 * 17 15 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 26 26 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 27 27 H 0.96998 * 120.00442 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47216 * 299.99726 * 14 13 2 29 29 H 1.09000 * 109.47117 * 59.99285 * 14 13 2 30 30 H 1.09000 * 109.87887 * 300.51486 * 18 17 15 31 31 H 1.09001 * 109.88430 * 61.67083 * 18 17 15 32 32 H 1.09001 * 110.92234 * 264.11094 * 19 18 17 33 33 H 1.08997 * 110.59247 * 140.78532 * 19 18 17 34 34 H 1.09003 * 111.00198 * 206.23303 * 20 19 18 35 35 H 1.08993 * 111.00567 * 82.37633 * 20 19 18 36 36 H 1.08997 * 110.37139 * 274.67792 * 21 17 15 37 37 H 1.09005 * 110.36632 * 36.89242 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 5.5412 -1.1011 -2.4128 9 14 3.3016 -2.1087 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7004 -3.1232 13 16 2.1347 -0.8550 1.4812 14 6 1.5664 0.2154 2.8309 15 6 1.9974 -0.3694 4.1513 16 8 2.6264 -1.4060 4.1790 17 7 1.6847 0.2600 5.3012 18 6 0.9367 1.5209 5.4120 19 6 0.8417 1.8672 6.9127 20 6 2.0341 1.0848 7.5239 21 6 2.0409 -0.1987 6.6562 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2617 -2.1369 27 1 6.0257 -1.5085 -3.1478 28 1 2.0001 1.2086 2.7142 29 1 0.4792 0.2882 2.8037 30 1 1.4638 2.3126 4.8795 31 1 -0.0640 1.3959 4.9983 32 1 -0.1026 1.5213 7.3331 33 1 0.9641 2.9392 7.0673 34 1 1.8495 0.8470 8.5715 35 1 2.9654 1.6394 7.4090 36 1 1.3001 -0.9090 7.0233 37 1 3.0321 -0.6523 6.6548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695879302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -42.903018 kcal Electronic energy + Delta-G solvation = -16840.088169 eV Core-core repulsion = 14129.358514 eV Total energy + Delta-G solvation = -2710.729656 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97038 -37.37863 -34.63323 -32.21301 -31.97212 -29.98541 -28.79773 -27.82840 -23.67508 -23.07908 -21.49576 -20.56123 -19.35837 -17.15452 -16.80937 -16.66801 -15.91369 -15.08048 -14.80435 -14.36385 -14.15796 -13.79895 -13.52173 -13.24740 -12.86356 -12.72215 -12.49635 -12.27096 -12.08874 -11.79641 -11.69122 -11.52770 -11.09987 -10.99397 -10.98341 -10.31956 -9.91075 -9.82212 -9.63932 -9.21065 -8.95213 -8.77072 -8.46599 -6.84165 -5.95926 -3.93534 2.04717 2.68407 3.00798 3.29603 3.34406 3.42768 3.45895 4.17691 4.25696 4.50768 4.55281 4.78204 4.94599 5.05729 5.16784 5.28041 5.37431 5.38448 5.40732 5.50953 5.54008 5.58178 5.63645 5.66907 5.81990 5.86634 6.15144 6.23871 6.45170 6.55489 7.05841 7.27289 7.37018 7.78969 8.18714 8.59889 9.12265 9.64802 11.17141 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.004294 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.496850 B = 6518.861904 C = 6857.924535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 H 0.079 0.921 4 C 0.005 3.995 5 C -0.515 4.515 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.265 1.265 13 S -0.151 6.151 14 C -0.141 4.141 15 C 0.548 3.452 16 O -0.510 6.510 17 N -0.625 5.625 18 C 0.098 3.902 19 C -0.131 4.131 20 C -0.134 4.134 21 C 0.106 3.894 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 7.684 17.925 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 H 0.097 0.903 4 C -0.033 4.033 5 C -0.553 4.553 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.190 1.190 13 S 0.076 5.924 14 C -0.292 4.292 15 C 0.335 3.665 16 O -0.384 6.384 17 N -0.362 5.362 18 C -0.025 4.025 19 C -0.169 4.169 20 C -0.172 4.172 21 C -0.017 4.017 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.729 6.068 17.814 22.175 hybrid contribution -1.141 0.854 -0.885 1.678 sum -12.871 6.922 16.929 22.364 Atomic orbital electron populations 1.22156 0.95367 1.02300 1.00763 1.23300 0.95921 1.02205 0.97096 0.90250 1.19450 0.98017 0.95651 0.90221 1.21142 0.89231 1.35306 1.09649 0.90022 1.24978 0.94699 0.95795 0.97769 1.69907 1.06477 1.45342 1.32184 0.86876 0.80432 0.80125 0.82483 1.20388 1.21310 1.18997 1.87969 1.74542 1.33733 0.96149 1.23509 1.04796 1.04542 0.96341 1.19557 0.79221 0.84101 0.83594 1.90767 1.38611 1.22736 1.86311 1.48457 1.57024 1.24967 1.05768 1.22048 0.96463 0.86355 0.97613 1.22631 0.99204 1.01130 0.93971 1.22804 0.99020 0.96043 0.99359 1.22209 1.01645 0.96542 0.81288 0.91863 0.92203 0.93914 0.95653 0.95537 0.92805 0.87983 0.88336 0.91189 0.91347 0.90458 0.89912 0.89775 0.90443 0.91535 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.10 37.16 0.34 -1.95 16 2 C -0.06 -1.12 2.77 -26.74 -0.07 -1.20 16 3 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 4 C 0.01 0.12 3.51 -27.89 -0.10 0.02 16 5 C -0.52 -14.89 9.09 -34.44 -0.31 -15.20 16 6 H 0.08 2.57 7.84 -52.49 -0.41 2.15 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 9 Si 0.87 22.07 27.47 -169.99 -4.67 17.40 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 S -0.15 -3.16 19.60 -107.50 -2.11 -5.26 16 14 C -0.14 -2.16 5.31 36.00 0.19 -1.97 16 15 C 0.55 8.91 7.87 -10.99 -0.09 8.83 16 16 O -0.51 -10.61 16.12 5.56 0.09 -10.52 16 17 N -0.62 -7.54 3.33 -170.51 -0.57 -8.11 16 18 C 0.10 0.80 6.48 -3.07 -0.02 0.78 16 19 C -0.13 -0.76 6.95 -24.90 -0.17 -0.93 16 20 C -0.13 -0.89 7.08 -24.57 -0.17 -1.06 16 21 C 0.11 1.07 6.91 -2.52 -0.02 1.05 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.56 6.92 -51.93 -0.36 0.20 16 25 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.10 1.40 8.14 -51.92 -0.42 0.98 16 29 H 0.10 1.25 7.14 -51.92 -0.37 0.87 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -34.91 314.35 -8.41 -43.32 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -6.14 Total: -4.23 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.52 Total: -9.68 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.21 Total: -35.76 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.91 -8.41 -43.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695879302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.412 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds