Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47320 * 89.99850 * 9 7 5 11 11 H 1.48505 * 109.47486 * 209.99782 * 9 7 5 12 12 H 1.48495 * 109.47140 * 329.99955 * 9 7 5 13 13 S 1.81405 * 109.47264 * 119.99579 * 2 1 3 14 14 C 1.81397 * 103.00221 * 295.00358 * 13 2 1 15 15 C 1.50698 * 109.47159 * 179.97438 * 14 13 2 16 16 O 1.21277 * 120.00027 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99841 * 179.97438 * 15 14 13 18 18 C 1.47025 * 125.65198 * 359.69892 * 17 15 14 19 19 C 1.54312 * 107.27915 * 180.96555 * 18 17 15 20 20 C 1.55161 * 102.86303 * 22.52579 * 19 18 17 21 21 C 1.47425 * 125.64961 * 179.97438 * 17 15 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 26 26 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 27 27 H 0.96998 * 120.00442 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47216 * 299.99726 * 14 13 2 29 29 H 1.09000 * 109.47117 * 59.99285 * 14 13 2 30 30 H 1.09000 * 109.87887 * 300.51486 * 18 17 15 31 31 H 1.09001 * 109.88430 * 61.67083 * 18 17 15 32 32 H 1.09001 * 110.92234 * 264.11094 * 19 18 17 33 33 H 1.08997 * 110.59247 * 140.78532 * 19 18 17 34 34 H 1.09003 * 111.00198 * 206.23303 * 20 19 18 35 35 H 1.08993 * 111.00567 * 82.37633 * 20 19 18 36 36 H 1.08997 * 110.37139 * 274.67792 * 21 17 15 37 37 H 1.09005 * 110.36632 * 36.89242 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 5.5412 -1.1011 -2.4128 9 14 3.3016 -2.1087 -3.6952 10 1 2.9409 -1.1639 -4.7826 11 1 4.1600 -3.1896 -4.2431 12 1 2.0655 -2.7004 -3.1232 13 16 2.1347 -0.8550 1.4812 14 6 1.5664 0.2154 2.8309 15 6 1.9974 -0.3694 4.1513 16 8 2.6264 -1.4060 4.1790 17 7 1.6847 0.2600 5.3012 18 6 0.9367 1.5209 5.4120 19 6 0.8417 1.8672 6.9127 20 6 2.0341 1.0848 7.5239 21 6 2.0409 -0.1987 6.6562 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2617 -2.1369 27 1 6.0257 -1.5085 -3.1478 28 1 2.0001 1.2086 2.7142 29 1 0.4792 0.2882 2.8037 30 1 1.4638 2.3126 4.8795 31 1 -0.0640 1.3959 4.9983 32 1 -0.1026 1.5213 7.3331 33 1 0.9641 2.9392 7.0673 34 1 1.8495 0.8470 8.5715 35 1 2.9654 1.6394 7.4090 36 1 1.3001 -0.9090 7.0233 37 1 3.0321 -0.6523 6.6548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695879302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -66.090939 kcal Electronic energy + Delta-G solvation = -16841.093673 eV Core-core repulsion = 14129.358514 eV Total energy + Delta-G solvation = -2711.735159 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01306 -38.38053 -36.40861 -34.14469 -33.10730 -30.97702 -29.93177 -29.33323 -24.92221 -24.54525 -22.32915 -22.03011 -20.39892 -18.88579 -18.28394 -17.65938 -17.37047 -16.44814 -16.29738 -15.82998 -15.54200 -14.89204 -14.48324 -14.35157 -14.18328 -14.10662 -13.89083 -13.63452 -13.39356 -13.18844 -12.77466 -12.55631 -12.23447 -12.16247 -12.03811 -11.75626 -11.59136 -11.53079 -11.38893 -11.11331 -10.75925 -10.45890 -9.74539 -8.48727 -8.22803 -6.26467 0.63623 1.34562 1.38964 1.46187 1.49377 1.82417 1.98348 2.38282 3.11400 3.39476 3.67394 3.86572 3.96654 4.05538 4.12539 4.18968 4.23382 4.31317 4.48071 4.55593 4.65767 4.84815 4.91122 4.94094 4.96882 4.98652 5.08684 5.12328 5.24281 5.25986 5.38728 5.41073 5.65023 6.32368 6.34718 6.80669 7.01487 7.35419 8.93125 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.004294 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.496850 B = 6518.861904 C = 6857.924535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 H 0.077 0.923 4 C 0.006 3.994 5 C -0.518 4.518 6 H 0.037 0.963 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.259 1.259 11 H -0.289 1.289 12 H -0.249 1.249 13 S -0.251 6.251 14 C -0.110 4.110 15 C 0.538 3.462 16 O -0.572 6.572 17 N -0.619 5.619 18 C 0.085 3.915 19 C -0.122 4.122 20 C -0.125 4.125 21 C 0.094 3.906 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.044 0.956 27 H 0.264 0.736 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.271 9.335 18.625 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 H 0.096 0.904 4 C -0.033 4.033 5 C -0.556 4.556 6 H 0.056 0.944 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.173 1.173 13 S -0.025 6.025 14 C -0.261 4.261 15 C 0.326 3.674 16 O -0.451 6.451 17 N -0.354 5.354 18 C -0.036 4.036 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.028 4.028 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.212 7.779 18.549 25.219 hybrid contribution -0.034 0.432 -0.917 1.015 sum -15.245 8.211 17.632 24.713 Atomic orbital electron populations 1.22083 0.91309 1.02995 1.03244 1.23152 0.98947 1.00699 0.94116 0.90435 1.19390 0.94661 0.95989 0.93216 1.21422 0.92009 1.34065 1.08110 0.94419 1.25989 0.95577 0.97053 1.00842 1.70081 1.08601 1.47236 1.33542 0.85714 0.79264 0.78793 0.79237 1.18407 1.21476 1.17279 1.88276 1.76697 1.37117 1.00420 1.23381 1.06667 1.03060 0.92975 1.19769 0.78947 0.83723 0.84978 1.90740 1.41618 1.25503 1.87247 1.48560 1.55847 1.25718 1.05247 1.22447 0.96786 0.84452 0.99932 1.22664 0.99222 1.02246 0.91782 1.22794 0.99604 0.93993 0.99885 1.22439 1.00489 0.98736 0.81124 0.92072 0.90333 0.90761 0.96388 0.93801 0.92744 0.86166 0.84727 0.90387 0.89593 0.89000 0.87770 0.87468 0.90762 0.90830 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.10 71.98 0.66 -3.15 16 2 C -0.04 -1.57 2.77 30.59 0.08 -1.48 16 3 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 4 C 0.01 0.27 3.51 29.85 0.10 0.37 16 5 C -0.52 -30.81 9.09 25.60 0.23 -30.58 16 6 H 0.04 2.50 7.84 -2.91 -0.02 2.48 16 7 C 0.00 0.09 5.47 84.65 0.46 0.55 16 8 N -0.95 -62.44 13.96 21.45 0.30 -62.14 16 9 Si 0.95 45.71 27.47 68.60 1.88 47.60 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 13 S -0.25 -10.73 19.60 -56.49 -1.11 -11.84 16 14 C -0.11 -3.21 5.31 71.24 0.38 -2.83 16 15 C 0.54 17.46 7.87 87.66 0.69 18.15 16 16 O -0.57 -24.94 16.12 -3.02 -0.05 -24.99 16 17 N -0.62 -14.11 3.33 -811.77 -2.70 -16.81 16 18 C 0.09 1.09 6.48 86.72 0.56 1.65 16 19 C -0.12 -0.90 6.95 31.78 0.22 -0.68 16 20 C -0.12 -1.32 7.08 32.00 0.23 -1.09 16 21 C 0.09 1.83 6.91 86.86 0.60 2.43 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.59 6.92 -2.38 -0.02 1.57 16 25 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 26 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 27 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 28 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.13 2.92 7.14 -2.39 -0.02 2.90 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.32 8.03 -2.38 -0.02 1.30 16 Total: -1.00 -81.77 314.35 3.52 -78.25 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.97 Total: 6.58 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.22 Total: -16.65 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.40 Total: -78.95 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.60 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.11 Total: -11.84 kcal Total: -81.77 3.52 -78.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695879302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.160 kcal (2) G-P(sol) polarization free energy of solvation -81.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds