Wall clock time and date at job start Mon Mar 30 2020 07:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 120.00163 * 2 1 4 4 H 1.48505 * 109.47057 * 274.66541 * 3 2 1 5 5 H 1.48500 * 109.46990 * 34.66016 * 3 2 1 6 6 H 1.48493 * 109.47288 * 154.66497 * 3 2 1 7 7 C 1.39952 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99691 * 162.23324 * 7 2 1 9 9 C 1.41395 * 120.00010 * 342.22793 * 7 2 1 10 10 C 1.40719 * 120.24067 * 155.29085 * 9 7 2 11 11 C 1.37619 * 119.74272 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24674 * 0.02678 * 11 10 9 13 13 C 1.50695 * 119.74378 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.47203 * 90.00051 * 13 12 11 15 15 C 1.46896 * 111.00224 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.34396 * 307.28463 * 16 15 14 18 18 C 1.51102 * 110.38867 * 69.69462 * 16 15 14 19 19 C 1.30525 * 111.10678 * 135.25333 * 18 16 15 20 20 C 1.51109 * 111.10270 * 359.97438 * 19 18 16 21 21 C 1.54632 * 110.38966 * 185.00035 * 16 15 14 22 22 C 1.38636 * 120.50178 * 0.24921 * 12 11 10 23 23 C 1.37612 * 120.24684 * 359.44542 * 22 12 11 24 24 H 0.96996 * 119.99662 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.12688 * 0.04826 * 10 9 7 26 26 H 1.07995 * 119.87157 * 179.97438 * 11 10 9 27 27 H 1.08999 * 109.47999 * 330.00163 * 13 12 11 28 28 H 1.09000 * 109.46996 * 209.99615 * 13 12 11 29 29 H 1.00900 * 110.99805 * 303.95052 * 14 13 12 30 30 H 1.08996 * 109.47237 * 59.99810 * 15 14 13 31 31 H 1.09006 * 109.46964 * 300.00016 * 15 14 13 32 32 H 1.08002 * 124.45075 * 315.22557 * 18 16 15 33 33 H 1.07999 * 124.45288 * 180.02562 * 19 18 16 34 34 H 1.08997 * 110.38678 * 224.75522 * 20 19 18 35 35 H 1.09002 * 110.47819 * 102.42519 * 20 19 18 36 36 H 1.08997 * 111.03429 * 334.58325 * 21 16 15 37 37 H 1.09003 * 111.03566 * 98.51670 * 21 16 15 38 38 H 1.07994 * 119.87027 * 179.70535 * 22 12 11 39 39 H 1.08003 * 120.12592 * 180.27700 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3913 2.1033 -1.3955 5 1 1.4925 2.6222 0.7962 6 1 3.5857 1.4137 0.5991 7 6 2.0080 -1.2121 -0.0005 8 1 3.0494 -1.2342 -0.2860 9 6 1.3516 -2.4075 0.3727 10 6 1.8218 -3.6493 -0.0930 11 6 1.1747 -4.8064 0.2762 12 6 0.0634 -4.7516 1.1033 13 6 -0.6368 -6.0257 1.5000 14 7 -0.0433 -6.5452 2.7394 15 6 -0.7028 -7.7893 3.1578 16 6 -0.0593 -8.2983 4.4492 17 1 1.0219 -8.3711 4.3307 18 6 -0.4044 -7.3870 5.6040 19 6 -0.7484 -8.0746 6.6588 20 6 -0.6905 -9.5592 6.3831 21 6 -0.6519 -9.6716 4.8415 22 6 -0.4120 -3.5333 1.5633 23 6 0.2230 -2.3641 1.2120 24 1 -0.4849 0.8400 -0.0004 25 1 2.6873 -3.6942 -0.7374 26 1 1.5336 -5.7606 -0.0803 27 1 -0.5249 -6.7643 0.7063 28 1 -1.6956 -5.8232 1.6614 29 1 0.9512 -6.6801 2.6351 30 1 -0.5917 -8.5402 2.3756 31 1 -1.7620 -7.5987 3.3307 32 1 -0.3706 -6.3083 5.5623 33 1 -1.0372 -7.6397 7.6042 34 1 -1.5779 -10.0536 6.7782 35 1 0.2102 -9.9929 6.8176 36 1 -1.6549 -9.7959 4.4333 37 1 0.0014 -10.4846 4.5244 38 1 -1.2814 -3.5021 2.2032 39 1 -0.1464 -1.4164 1.5752 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711779374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:45 Heat of formation + Delta-G solvation = 21.257523 kcal Electronic energy + Delta-G solvation = -17831.123665 eV Core-core repulsion = 15123.565363 eV Total energy + Delta-G solvation = -2707.558303 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.94817 -37.67843 -35.35763 -33.53818 -30.81467 -29.31040 -29.10948 -28.57630 -26.09963 -23.61551 -22.39252 -20.92189 -20.63045 -19.76243 -18.61336 -17.26923 -16.15571 -15.57049 -15.26880 -14.97815 -14.24483 -14.14218 -13.70900 -13.41180 -13.06442 -12.49864 -12.03076 -11.93353 -11.89504 -11.73155 -11.60962 -11.46146 -11.30061 -11.21957 -11.05220 -10.80720 -10.76954 -10.42811 -10.29427 -9.56574 -9.34403 -9.10531 -8.88030 -7.99519 -7.40930 -7.27379 -6.74025 -4.32373 2.34394 2.76798 3.08018 3.11076 3.12293 3.20446 3.94787 4.39742 4.61233 4.64459 4.80785 5.01940 5.25531 5.41759 5.47634 5.53625 5.64882 5.71496 5.74541 5.85695 5.90462 5.92681 5.98911 6.13730 6.27348 6.28409 6.40131 6.48911 6.62018 6.95544 6.98778 7.09732 7.32703 7.39028 7.45221 7.64552 7.76254 7.92971 8.08672 8.18494 8.33217 8.67649 8.92346 9.01060 10.20663 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.003453 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.761490 B = 8107.857784 C = 8410.395368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.227 4.227 11 C -0.086 4.086 12 C -0.212 4.212 13 C 0.125 3.875 14 N -0.683 5.683 15 C 0.067 3.933 16 C -0.068 4.068 17 H 0.080 0.920 18 C -0.128 4.128 19 C -0.194 4.194 20 C -0.097 4.097 21 C -0.122 4.122 22 C -0.079 4.079 23 C -0.167 4.167 24 H 0.280 0.720 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.338 0.662 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -12.671 7.939 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.247 4.247 11 C -0.105 4.105 12 C -0.214 4.214 13 C -0.003 4.003 14 N -0.314 5.314 15 C -0.063 4.063 16 C -0.087 4.087 17 H 0.098 0.902 18 C -0.146 4.146 19 C -0.212 4.212 20 C -0.134 4.134 21 C -0.160 4.160 22 C -0.098 4.098 23 C -0.186 4.186 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.392 -12.125 8.320 14.898 hybrid contribution 0.674 0.252 -0.708 1.009 sum -1.718 -11.873 7.612 14.208 Atomic orbital electron populations 1.69835 1.07582 1.29132 1.35312 1.25911 0.94708 1.01282 0.92252 0.86337 0.80800 0.80804 0.78996 1.19631 1.20044 1.18440 1.19588 0.98071 0.91330 1.40350 0.90543 1.17621 0.91077 0.91957 0.88358 1.20929 1.03794 0.92979 1.07010 1.20353 0.95685 0.96208 0.98210 1.18902 1.01413 0.92986 1.08090 1.20545 0.97680 0.93829 0.88252 1.60608 1.07931 1.28092 1.34759 1.21962 0.99051 0.90761 0.94515 1.21081 1.00131 0.93176 0.94305 0.90218 1.23325 0.97346 0.99886 0.94003 1.23213 1.03594 0.95370 0.99031 1.21306 1.01456 0.94833 0.95829 1.22512 1.01238 0.96731 0.95492 1.20492 0.98266 0.92510 0.98510 1.21305 0.99375 0.96786 1.01181 0.90932 0.89200 0.89976 0.96493 0.92052 0.84387 0.95877 0.91323 0.85176 0.86269 0.91685 0.91216 0.91092 0.91225 0.89512 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.72 10.97 55.55 0.61 -20.11 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.45 9.05 -37.74 -0.34 -12.80 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.11 3.03 5.57 -106.82 -0.60 2.44 16 10 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 11 C -0.09 -1.92 9.67 -39.66 -0.38 -2.30 16 12 C -0.21 -4.63 5.41 -104.33 -0.56 -5.19 16 13 C 0.12 2.22 5.80 -4.98 -0.03 2.19 16 14 N -0.68 -10.78 6.35 -115.06 -0.73 -11.51 16 15 C 0.07 0.86 5.01 -3.83 -0.02 0.84 16 16 C -0.07 -0.79 3.07 -90.72 -0.28 -1.07 16 17 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.13 -1.57 9.94 -35.70 -0.35 -1.92 16 19 C -0.19 -2.09 10.78 -35.69 -0.38 -2.48 16 20 C -0.10 -0.90 6.81 -26.83 -0.18 -1.08 16 21 C -0.12 -1.16 6.71 -25.02 -0.17 -1.33 16 22 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 23 C -0.17 -4.40 8.70 -38.88 -0.34 -4.74 16 24 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 25 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 26 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 29 H 0.34 5.32 8.72 -39.29 -0.34 4.98 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.16 6.18 -52.48 -0.32 2.84 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -27.04 323.66 -10.88 -37.93 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.12 Total: 8.92 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -4.49 Total: -33.87 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: -0.12 Total: -31.62 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.04 -10.88 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711779374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.183 kcal (2) G-P(sol) polarization free energy of solvation -27.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds