Wall clock time and date at job start Mon Mar 30 2020 07:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 120.00163 * 2 1 4 4 H 1.48505 * 109.47057 * 274.66541 * 3 2 1 5 5 H 1.48500 * 109.46990 * 34.66016 * 3 2 1 6 6 H 1.48493 * 109.47288 * 154.66497 * 3 2 1 7 7 C 1.39952 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99691 * 162.23324 * 7 2 1 9 9 C 1.41395 * 120.00010 * 342.22793 * 7 2 1 10 10 C 1.40719 * 120.24067 * 155.29085 * 9 7 2 11 11 C 1.37619 * 119.74272 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24674 * 0.02678 * 11 10 9 13 13 C 1.50695 * 119.74378 * 179.97438 * 12 11 10 14 14 N 1.46905 * 109.47203 * 90.00051 * 13 12 11 15 15 C 1.46896 * 111.00224 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47251 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.34396 * 307.28463 * 16 15 14 18 18 C 1.51102 * 110.38867 * 69.69462 * 16 15 14 19 19 C 1.30525 * 111.10678 * 135.25333 * 18 16 15 20 20 C 1.51109 * 111.10270 * 359.97438 * 19 18 16 21 21 C 1.54632 * 110.38966 * 185.00035 * 16 15 14 22 22 C 1.38636 * 120.50178 * 0.24921 * 12 11 10 23 23 C 1.37612 * 120.24684 * 359.44542 * 22 12 11 24 24 H 0.96996 * 119.99662 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.12688 * 0.04826 * 10 9 7 26 26 H 1.07995 * 119.87157 * 179.97438 * 11 10 9 27 27 H 1.08999 * 109.47999 * 330.00163 * 13 12 11 28 28 H 1.09000 * 109.46996 * 209.99615 * 13 12 11 29 29 H 1.00900 * 110.99805 * 303.95052 * 14 13 12 30 30 H 1.08996 * 109.47237 * 59.99810 * 15 14 13 31 31 H 1.09006 * 109.46964 * 300.00016 * 15 14 13 32 32 H 1.08002 * 124.45075 * 315.22557 * 18 16 15 33 33 H 1.07999 * 124.45288 * 180.02562 * 19 18 16 34 34 H 1.08997 * 110.38678 * 224.75522 * 20 19 18 35 35 H 1.09002 * 110.47819 * 102.42519 * 20 19 18 36 36 H 1.08997 * 111.03429 * 334.58325 * 21 16 15 37 37 H 1.09003 * 111.03566 * 98.51670 * 21 16 15 38 38 H 1.07994 * 119.87027 * 179.70535 * 22 12 11 39 39 H 1.08003 * 120.12592 * 180.27700 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3913 2.1033 -1.3955 5 1 1.4925 2.6222 0.7962 6 1 3.5857 1.4137 0.5991 7 6 2.0080 -1.2121 -0.0005 8 1 3.0494 -1.2342 -0.2860 9 6 1.3516 -2.4075 0.3727 10 6 1.8218 -3.6493 -0.0930 11 6 1.1747 -4.8064 0.2762 12 6 0.0634 -4.7516 1.1033 13 6 -0.6368 -6.0257 1.5000 14 7 -0.0433 -6.5452 2.7394 15 6 -0.7028 -7.7893 3.1578 16 6 -0.0593 -8.2983 4.4492 17 1 1.0219 -8.3711 4.3307 18 6 -0.4044 -7.3870 5.6040 19 6 -0.7484 -8.0746 6.6588 20 6 -0.6905 -9.5592 6.3831 21 6 -0.6519 -9.6716 4.8415 22 6 -0.4120 -3.5333 1.5633 23 6 0.2230 -2.3641 1.2120 24 1 -0.4849 0.8400 -0.0004 25 1 2.6873 -3.6942 -0.7374 26 1 1.5336 -5.7606 -0.0803 27 1 -0.5249 -6.7643 0.7063 28 1 -1.6956 -5.8232 1.6614 29 1 0.9512 -6.6801 2.6351 30 1 -0.5917 -8.5402 2.3756 31 1 -1.7620 -7.5987 3.3307 32 1 -0.3706 -6.3083 5.5623 33 1 -1.0372 -7.6397 7.6042 34 1 -1.5779 -10.0536 6.7782 35 1 0.2102 -9.9929 6.8176 36 1 -1.6549 -9.7959 4.4333 37 1 0.0014 -10.4846 4.5244 38 1 -1.2814 -3.5021 2.2032 39 1 -0.1464 -1.4164 1.5752 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711779374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:45 Heat of formation + Delta-G solvation = 8.060636 kcal Electronic energy + Delta-G solvation = -17831.695925 eV Core-core repulsion = 15123.565363 eV Total energy + Delta-G solvation = -2708.130563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.91354 -39.40692 -36.76783 -35.30086 -32.38467 -31.15752 -30.29212 -29.62453 -27.69743 -25.08161 -23.64907 -22.82321 -21.79614 -21.20481 -19.51580 -19.20951 -17.23409 -17.08531 -16.61705 -16.09789 -15.78517 -15.53675 -15.31524 -15.08650 -14.38451 -14.00764 -13.79568 -13.35397 -13.32047 -12.84243 -12.77121 -12.70708 -12.63255 -12.58908 -12.25812 -12.18079 -12.04900 -11.75624 -11.70405 -11.34656 -11.20867 -10.99146 -9.74950 -9.33510 -9.31646 -9.09066 -8.63030 -6.32179 0.96163 1.16555 1.37661 1.45983 1.48761 1.54305 2.21066 2.70695 3.38508 3.77886 3.82140 3.92676 4.05755 4.31641 4.34048 4.42639 4.53698 4.56715 4.64529 4.69069 4.71877 4.80731 4.86046 4.99738 5.04847 5.07858 5.13885 5.17312 5.29970 5.39815 5.44957 5.48123 5.72743 5.74615 5.95993 6.05897 6.11706 6.20457 6.31010 6.40617 6.57305 6.72613 6.95599 7.05936 8.34272 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.038731 B = 0.003453 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.761490 B = 8107.857784 C = 8410.395368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.243 4.243 11 C -0.085 4.085 12 C -0.199 4.199 13 C 0.132 3.868 14 N -0.692 5.692 15 C 0.071 3.929 16 C -0.065 4.065 17 H 0.077 0.923 18 C -0.158 4.158 19 C -0.183 4.183 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.191 4.191 24 H 0.287 0.713 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -14.529 8.513 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.263 4.263 11 C -0.103 4.103 12 C -0.201 4.201 13 C 0.004 3.996 14 N -0.323 5.323 15 C -0.058 4.058 16 C -0.084 4.084 17 H 0.095 0.905 18 C -0.176 4.176 19 C -0.201 4.201 20 C -0.134 4.134 21 C -0.155 4.155 22 C -0.106 4.106 23 C -0.211 4.211 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.134 0.866 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.427 -14.007 8.898 16.771 hybrid contribution 0.618 0.668 -0.818 1.224 sum -1.809 -13.339 8.080 15.700 Atomic orbital electron populations 1.69890 1.09034 1.30456 1.35931 1.26773 0.95495 1.04554 0.91226 0.85206 0.79175 0.76001 0.79393 1.18634 1.19043 1.18304 1.19835 0.98289 0.92658 1.42523 0.90794 1.17968 0.91920 0.93148 0.89303 1.21158 1.04421 0.93276 1.07414 1.20689 0.95292 0.96801 0.97542 1.19343 1.00581 0.94069 1.06095 1.20429 0.97298 0.92206 0.89666 1.60496 1.08121 1.30160 1.33506 1.21980 0.98598 0.89642 0.95534 1.21058 0.99990 0.94150 0.93166 0.90478 1.23273 0.99769 0.99148 0.95393 1.23498 1.01348 0.96463 0.98797 1.21364 1.02671 0.93595 0.95803 1.22522 1.01635 0.95737 0.95603 1.20718 0.98546 0.92645 0.98657 1.21256 1.00356 0.97008 1.02456 0.90216 0.88621 0.86646 0.94852 0.91793 0.84280 0.94576 0.91715 0.87351 0.85414 0.90224 0.90129 0.90703 0.89688 0.88290 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.58 10.97 21.83 0.24 -44.34 16 2 C 0.03 1.77 5.14 85.26 0.44 2.21 16 3 Si 0.98 39.20 29.60 68.60 2.03 41.23 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.50 -28.05 9.05 23.46 0.21 -27.84 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.29 16 10 C -0.24 -12.19 9.80 22.73 0.22 -11.97 16 11 C -0.08 -3.69 9.67 22.22 0.21 -3.47 16 12 C -0.20 -8.48 5.41 -19.67 -0.11 -8.59 16 13 C 0.13 4.41 5.80 85.55 0.50 4.91 16 14 N -0.69 -20.62 6.35 -517.94 -3.29 -23.90 16 15 C 0.07 1.69 5.01 86.30 0.43 2.12 16 16 C -0.07 -1.37 3.07 -10.86 -0.03 -1.40 16 17 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 18 C -0.16 -3.72 9.94 26.26 0.26 -3.46 16 19 C -0.18 -3.61 10.78 26.27 0.28 -3.33 16 20 C -0.10 -1.51 6.81 30.53 0.21 -1.30 16 21 C -0.12 -1.87 6.71 31.70 0.21 -1.66 16 22 C -0.09 -4.16 9.67 22.22 0.21 -3.95 16 23 C -0.19 -10.45 8.70 22.73 0.20 -10.26 16 24 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 25 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 26 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 28 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 29 H 0.34 10.04 8.72 -89.69 -0.78 9.26 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.59 8.13 -2.38 -0.02 1.57 16 32 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.15 7.91 -2.39 -0.02 1.13 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.10 5.55 6.18 -2.91 -0.02 5.54 16 Total: -1.00 -59.61 323.66 2.35 -57.25 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.24 Total: 33.49 kcal Atomic # 6 Polarization: -66.85 SS G_CDS: 3.14 Total: -63.72 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -3.05 Total: -68.25 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -59.61 2.35 -57.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711779374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.314 kcal (2) G-P(sol) polarization free energy of solvation -59.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds