Wall clock time and date at job start Mon Mar 30 2020 07:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86796 * 119.99951 * 2 1 4 4 H 1.48495 * 109.47106 * 269.99735 * 3 2 1 5 5 H 1.48502 * 109.47309 * 30.00048 * 3 2 1 6 6 H 1.48508 * 109.47069 * 149.99608 * 3 2 1 7 7 C 1.39943 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00468 * 197.87044 * 7 2 1 9 9 C 1.41396 * 119.99951 * 17.86595 * 7 2 1 10 10 C 1.40716 * 120.24674 * 204.39051 * 9 7 2 11 11 C 1.37622 * 119.74781 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.24501 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.74422 * 179.97438 * 12 11 10 14 14 N 1.46898 * 109.46865 * 90.00220 * 13 12 11 15 15 C 1.46903 * 110.99918 * 179.97438 * 14 13 12 16 16 H 1.09005 * 115.55386 * 9.41634 * 15 14 13 17 17 C 1.53122 * 117.54794 * 223.63023 * 15 14 13 18 18 C 1.52461 * 117.51229 * 155.14982 * 15 14 13 19 19 C 1.53248 * 128.58663 * 349.89324 * 18 15 14 20 20 C 1.53890 * 86.88199 * 194.88372 * 19 18 15 21 21 C 1.53254 * 128.58617 * 225.08726 * 18 15 14 22 22 C 1.38632 * 120.50136 * 0.27333 * 12 11 10 23 23 C 1.37617 * 120.25230 * 359.44675 * 22 12 11 24 24 H 0.97003 * 119.99227 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.12794 * 359.96378 * 10 9 7 26 26 H 1.07994 * 119.87490 * 179.97438 * 11 10 9 27 27 H 1.08995 * 109.47111 * 329.99917 * 13 12 11 28 28 H 1.09004 * 109.46485 * 209.99857 * 13 12 11 29 29 H 1.00902 * 110.99903 * 56.04724 * 14 13 12 30 30 H 1.08999 * 117.51470 * 0.02562 * 17 15 14 31 31 H 1.08999 * 117.51055 * 145.12253 * 17 15 14 32 32 H 1.08993 * 113.64953 * 309.38575 * 19 18 15 33 33 H 1.09006 * 113.64494 * 80.39099 * 19 18 15 34 34 H 1.09000 * 113.58920 * 270.39249 * 20 19 18 35 35 H 1.09005 * 113.58635 * 139.57437 * 20 19 18 36 36 H 1.08999 * 113.65008 * 279.61593 * 21 18 15 37 37 H 1.09005 * 113.64515 * 50.52620 * 21 18 15 38 38 H 1.08000 * 119.87104 * 179.69911 * 22 12 11 39 39 H 1.07994 * 120.13000 * 180.27094 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2345 0.2876 9 6 1.3521 -2.4071 -0.3746 10 6 1.8256 -3.6499 0.0852 11 6 1.1791 -4.8067 -0.2858 12 6 0.0656 -4.7508 -1.1099 13 6 -0.6334 -6.0246 -1.5097 14 7 -1.6790 -6.3386 -0.5268 15 6 -2.3837 -7.5767 -0.8852 16 1 -1.9421 -8.1500 -1.7003 17 6 -3.9099 -7.5843 -0.7608 18 6 -3.0562 -8.3552 0.2400 19 6 -2.9339 -8.1458 1.7532 20 6 -3.5676 -9.5390 1.9125 21 6 -3.0268 -9.8637 0.5089 22 6 -0.4059 -3.5325 -1.5738 23 6 0.2213 -2.3626 -1.2110 24 1 -0.4849 0.8401 -0.0004 25 1 2.6932 -3.6957 0.7268 26 1 1.5410 -5.7616 0.0655 27 1 0.0891 -6.8400 -1.5446 28 1 -1.0856 -5.8975 -2.4933 29 1 -2.3257 -5.5702 -0.4289 30 1 -4.3913 -6.6702 -0.4133 31 1 -4.4719 -8.1627 -1.4940 32 1 -1.9038 -8.0911 2.1051 33 1 -3.5564 -7.3362 2.1342 34 1 -4.6560 -9.5195 1.9669 35 1 -3.1143 -10.1365 2.7036 36 1 -3.7238 -10.4314 -0.1075 37 1 -2.0226 -10.2876 0.5129 38 1 -1.2713 -3.5011 -2.2192 39 1 -0.1503 -1.4143 -1.5700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721157833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:30 Heat of formation + Delta-G solvation = 57.172761 kcal Electronic energy + Delta-G solvation = -17987.290824 eV Core-core repulsion = 15281.289923 eV Total energy + Delta-G solvation = -2706.000901 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.44518 -37.67688 -35.42845 -33.75027 -32.00951 -29.51720 -29.16231 -26.10662 -25.56246 -23.08692 -22.99535 -21.22844 -20.92462 -19.82889 -18.13979 -17.27416 -15.78865 -15.29851 -15.22456 -15.17023 -14.44070 -14.13932 -13.68626 -13.27919 -12.76793 -12.49416 -12.31522 -12.00941 -11.92611 -11.82493 -11.49006 -11.44637 -11.29299 -11.09625 -10.94846 -10.60590 -10.33661 -10.21006 -10.09453 -9.74693 -9.46764 -9.34123 -9.12778 -7.79916 -7.42533 -7.27437 -6.75385 -4.33852 2.74704 3.07055 3.10739 3.11086 3.18768 3.83183 3.93620 4.24981 4.62660 4.71593 4.79236 4.88109 4.92972 5.22115 5.44766 5.61049 5.68381 5.75053 5.75947 5.83497 5.86617 5.88791 5.94298 6.04269 6.14968 6.31719 6.38993 6.40656 6.44797 6.45778 6.96442 7.09002 7.29469 7.39822 7.48192 7.63370 7.76416 7.91585 8.07198 8.16364 8.32331 8.65698 8.91137 8.99632 10.19120 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.003624 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.379803 B = 7724.566515 C = 7759.385606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.215 4.215 13 C 0.127 3.873 14 N -0.649 5.649 15 C 0.043 3.957 16 H 0.103 0.897 17 C -0.180 4.180 18 C -0.152 4.152 19 C -0.087 4.087 20 C -0.140 4.140 21 C -0.099 4.099 22 C -0.095 4.095 23 C -0.166 4.166 24 H 0.280 0.720 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.343 0.657 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -11.728 -0.666 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.087 4.087 12 C -0.217 4.217 13 C -0.001 4.001 14 N -0.279 5.279 15 C -0.068 4.068 16 H 0.120 0.880 17 C -0.219 4.219 18 C -0.154 4.154 19 C -0.124 4.124 20 C -0.178 4.178 21 C -0.137 4.137 22 C -0.114 4.114 23 C -0.186 4.186 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.163 0.837 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.076 -11.856 -0.222 13.324 hybrid contribution -0.324 1.136 -0.682 1.365 sum -6.400 -10.720 -0.904 12.518 Atomic orbital electron populations 1.69840 1.07578 1.29129 1.35242 1.25911 0.94714 1.01290 0.92264 0.86322 0.80524 0.80639 0.79287 1.19307 1.20342 1.18618 1.19616 0.98168 0.91327 1.40188 0.90463 1.17626 0.91028 0.92017 0.88319 1.20979 1.03901 0.92932 1.07012 1.20336 0.95224 0.96344 0.96756 1.18895 1.01113 0.92545 1.09158 1.20600 0.92293 0.95978 0.91213 1.60340 1.15216 1.03864 1.48482 1.22385 0.90950 0.95307 0.98159 0.87950 1.23353 0.95004 1.01997 1.01509 1.22471 1.05095 0.94697 0.93115 1.22263 1.01220 0.96229 0.92732 1.22778 1.00214 0.97923 0.96874 1.22434 1.01008 0.93539 0.96679 1.20526 0.98299 0.92896 0.99668 1.21270 0.99533 0.96603 1.01172 0.90933 0.89117 0.89479 0.92013 0.96153 0.83744 0.88660 0.89082 0.89450 0.91895 0.90579 0.91680 0.91995 0.89938 0.89927 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.59 10.96 55.55 0.61 -19.98 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.11 3.03 5.57 -106.82 -0.60 2.43 16 10 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 11 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 12 C -0.22 -4.68 5.41 -104.33 -0.56 -5.25 16 13 C 0.13 2.25 5.66 -4.98 -0.03 2.22 16 14 N -0.65 -10.73 6.75 -108.21 -0.73 -11.46 16 15 C 0.04 0.59 6.31 -67.92 -0.43 0.16 16 16 H 0.10 1.34 7.90 -51.93 -0.41 0.93 16 17 C -0.18 -2.15 10.23 -26.94 -0.28 -2.43 16 18 C -0.15 -1.89 3.02 -154.80 -0.47 -2.36 16 19 C -0.09 -1.08 8.08 -26.14 -0.21 -1.29 16 20 C -0.14 -1.43 8.08 -25.81 -0.21 -1.64 16 21 C -0.10 -1.04 8.10 -26.14 -0.21 -1.25 16 22 C -0.09 -2.20 9.67 -39.66 -0.38 -2.58 16 23 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 25 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.34 5.83 8.51 -39.29 -0.33 5.50 16 30 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -26.86 325.30 -11.26 -38.12 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.10 Total: 10.30 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: -4.91 Total: -35.60 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: -0.12 Total: -31.44 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.86 -11.26 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721157833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.292 kcal (2) G-P(sol) polarization free energy of solvation -26.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds