Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36574 * 120.00149 * 2 1 4 4 C 1.39883 * 119.99971 * 180.20847 * 3 2 1 5 5 C 1.47260 * 120.00582 * 179.78314 * 4 3 2 6 6 N 1.29868 * 119.99929 * 179.72315 * 5 4 3 7 7 N 1.40100 * 119.99913 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99934 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47197 * 29.98909 * 8 7 6 10 10 C 1.53005 * 109.46437 * 269.99419 * 8 7 6 11 11 C 1.50701 * 109.47260 * 149.99904 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 C 1.39921 * 119.98859 * 359.50848 * 4 3 2 20 20 C 1.36541 * 119.99198 * 0.25339 * 19 4 3 21 21 C 1.39846 * 119.99626 * 179.73748 * 2 1 3 22 22 C 1.43206 * 119.99469 * 0.02654 * 21 2 1 23 23 N 3.48446 * 80.33197 * 179.75331 * 2 1 3 24 24 H 1.08999 * 109.46972 * 270.25910 * 1 2 3 25 25 H 1.08995 * 109.46781 * 30.26060 * 1 2 3 26 26 H 1.09000 * 109.46695 * 150.25867 * 1 2 3 27 27 H 1.08002 * 120.00227 * 359.97246 * 3 2 1 28 28 H 1.08003 * 119.99835 * 359.72477 * 5 4 3 29 29 H 0.96999 * 119.99970 * 359.97438 * 7 6 5 30 30 H 1.09004 * 109.46658 * 179.97438 * 10 8 7 31 31 H 1.08995 * 109.47438 * 299.99560 * 10 8 7 32 32 H 1.08996 * 109.47069 * 60.00420 * 10 8 7 33 33 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.00290 * 180.27157 * 19 4 3 35 35 H 1.08006 * 119.99636 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.1828 0.0000 4 6 3.5888 1.1827 -0.0044 5 6 4.3252 2.4579 -0.0092 6 7 5.6239 2.4578 -0.0079 7 7 6.3245 3.6710 -0.0119 8 6 7.7895 3.6708 -0.0110 9 1 8.1531 2.7788 -0.5211 10 6 8.2984 3.6762 1.4319 11 6 8.2925 4.8985 -0.7257 12 1 7.5910 5.6078 -1.1396 13 6 9.6481 5.1131 -0.8565 14 7 10.5023 4.2493 -0.3527 15 14 10.2716 6.6309 -1.7491 16 1 10.4412 7.7416 -0.7781 17 1 11.5776 6.3282 -2.3877 18 1 9.2917 7.0299 -2.7911 19 6 4.2881 -0.0292 0.0016 20 6 3.6050 -1.2114 0.0065 21 6 2.2062 -1.2111 0.0055 22 6 1.4900 -2.4512 0.0107 23 7 0.9219 -3.4349 0.0148 24 1 -0.3633 0.0046 1.0277 25 1 -0.3633 0.8876 -0.5179 26 1 -0.3633 -0.8923 -0.5098 27 1 1.6500 2.1181 -0.0004 28 1 3.7853 3.3933 -0.0139 29 1 5.8396 4.5110 -0.0161 30 1 9.3885 3.6756 1.4327 31 1 7.9349 4.5682 1.9421 32 1 7.9347 2.7882 1.9488 33 1 11.4560 4.4001 -0.4451 34 1 5.3681 -0.0294 0.0026 35 1 4.1448 -2.1469 0.0115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766454336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = 69.616491 kcal Electronic energy + Delta-G solvation = -17144.199804 eV Core-core repulsion = 14335.198161 eV Total energy + Delta-G solvation = -2809.001644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65833 -38.18302 -37.42782 -35.90917 -34.04564 -33.26904 -31.99577 -28.96734 -28.05094 -27.28572 -25.18643 -23.08699 -22.33113 -21.27104 -19.60008 -18.71421 -17.63224 -17.07991 -16.42350 -16.08882 -15.36653 -15.36129 -15.28294 -14.49081 -14.39208 -14.13273 -14.06452 -13.97440 -13.79224 -13.48587 -13.19140 -13.01733 -12.91353 -12.71487 -12.45844 -12.29007 -12.15133 -12.04403 -11.96250 -11.13575 -10.87962 -10.57638 -10.01231 -9.72919 -8.41416 -8.15905 -6.33235 -0.43875 0.51181 1.41298 1.45113 1.45556 1.55638 1.64125 2.16527 2.23144 2.48119 2.92336 3.03247 3.13109 3.82644 3.88228 3.90444 4.39508 4.45059 4.64702 4.69575 4.76445 4.80503 4.84008 5.01163 5.01495 5.13636 5.17886 5.32159 5.44619 5.49514 5.51400 5.63364 5.82316 5.90633 5.91593 6.19290 6.41371 6.47280 6.85708 7.38439 7.77215 8.88428 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.045427 B = 0.003224 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.228290 B = 8684.104939 C = 8967.025386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.027 4.027 3 C -0.101 4.101 4 C 0.012 3.988 5 C 0.014 3.986 6 N -0.232 5.232 7 N -0.635 5.635 8 C 0.306 3.694 9 H 0.004 0.996 10 C -0.137 4.137 11 C -0.547 4.547 12 H 0.063 0.937 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.120 4.120 20 C -0.058 4.058 21 C -0.055 4.055 22 C 0.284 3.716 23 N -0.467 5.467 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.165 0.835 28 H 0.131 0.869 29 H 0.376 0.624 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.020 0.980 33 H 0.266 0.734 34 H 0.126 0.874 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 -4.046 1.114 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.030 4.030 3 C -0.121 4.121 4 C 0.009 3.991 5 C -0.195 4.195 6 N -0.043 5.043 7 N -0.372 5.372 8 C 0.203 3.797 9 H 0.022 0.978 10 C -0.197 4.197 11 C -0.586 4.586 12 H 0.081 0.919 13 C -0.181 4.181 14 N -0.553 5.553 15 Si 0.793 3.207 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.140 4.140 20 C -0.079 4.079 21 C -0.059 4.059 22 C -0.030 4.030 23 N -0.143 5.143 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.182 0.818 28 H 0.148 0.852 29 H 0.214 0.786 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.487 -6.145 1.139 17.632 hybrid contribution 0.395 1.818 -0.357 1.894 sum -16.092 -4.328 0.782 16.682 Atomic orbital electron populations 1.20969 0.88863 1.03996 1.03921 1.19715 0.97168 0.90679 0.95419 1.20933 0.91523 0.98957 1.00711 1.18787 0.93288 0.90793 0.96257 1.24068 0.90365 0.97685 1.07395 1.74000 1.10660 1.13227 1.06430 1.48590 1.05772 1.00439 1.82355 1.18130 0.73498 0.95565 0.92538 0.97839 1.22030 1.02606 0.97350 0.97693 1.21532 0.92420 1.07783 1.36895 0.91926 1.25682 0.96705 0.99635 0.96085 1.70009 1.02669 1.37027 1.45563 0.85405 0.77569 0.79058 0.78657 1.19774 1.20907 1.19314 1.21047 1.00815 0.91550 1.00611 1.20912 0.91704 0.99192 0.96047 1.16099 0.92180 0.86364 1.11291 1.25798 0.92337 0.92534 0.92288 1.81255 1.10093 1.11989 1.10986 0.89335 0.88301 0.92446 0.81785 0.85169 0.78641 0.91406 0.95025 0.96133 0.92436 0.85650 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.60 71.24 0.68 -0.66 16 2 C -0.03 -0.43 5.88 -19.86 -0.12 -0.54 16 3 C -0.10 -1.61 9.37 22.28 0.21 -1.40 16 4 C 0.01 0.27 5.87 -20.10 -0.12 0.15 16 5 C 0.01 0.37 10.74 87.36 0.94 1.31 16 6 N -0.23 -8.59 10.60 -52.28 -0.55 -9.14 16 7 N -0.63 -26.43 6.10 -172.51 -1.05 -27.48 16 8 C 0.31 15.32 3.23 44.25 0.14 15.46 16 9 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 10 C -0.14 -6.64 9.30 71.98 0.67 -5.97 16 11 C -0.55 -28.69 8.73 25.60 0.22 -28.46 16 12 H 0.06 3.17 7.79 -2.91 -0.02 3.14 16 13 C 0.02 1.02 5.31 84.65 0.45 1.47 16 14 N -0.91 -50.62 11.33 21.45 0.24 -50.38 16 15 Si 0.97 41.40 29.54 68.60 2.03 43.42 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 C -0.12 -2.83 9.52 22.28 0.21 -2.62 16 20 C -0.06 -1.15 9.69 22.27 0.22 -0.93 16 21 C -0.05 -1.03 5.74 -21.24 -0.12 -1.15 16 22 C 0.28 6.12 13.77 88.33 1.22 7.34 16 23 N -0.47 -12.01 18.54 19.01 0.35 -11.66 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 26 H 0.06 0.75 7.08 -2.39 -0.02 0.74 16 27 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.13 2.90 8.02 -2.91 -0.02 2.88 16 29 H 0.38 14.18 8.58 -213.32 -1.83 12.35 16 30 H 0.07 3.58 6.08 -2.38 -0.01 3.56 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.13 3.41 7.54 -2.91 -0.02 3.39 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -61.25 314.33 4.89 -56.35 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.72 Total: 14.89 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 4.60 Total: -16.01 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -1.01 Total: -98.66 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -61.25 4.89 -56.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766454336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.971 kcal (2) G-P(sol) polarization free energy of solvation -61.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds