Wall clock time and date at job start Mon Mar 30 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 H 1.09008 * 109.47145 * 247.20472 * 3 2 1 5 5 N 1.46508 * 109.46950 * 127.20941 * 3 2 1 6 6 C 1.34772 * 119.99837 * 85.00016 * 5 3 2 7 7 O 1.21280 * 120.00460 * 359.97438 * 6 5 3 8 8 C 1.50702 * 119.99715 * 180.02562 * 6 5 3 9 9 H 1.09001 * 109.47374 * 59.99945 * 8 6 5 10 10 C 1.52997 * 109.47424 * 299.99768 * 8 6 5 11 11 C 1.50699 * 109.47097 * 179.97438 * 8 6 5 12 12 H 1.08005 * 120.00217 * 5.64490 * 11 8 6 13 13 C 1.37877 * 119.99998 * 185.64627 * 11 8 6 14 14 N 1.31522 * 120.00200 * 197.45808 * 13 11 8 15 15 Si 1.86799 * 120.00040 * 17.45261 * 13 11 8 16 16 H 1.48502 * 109.47176 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47386 * 299.99945 * 15 13 11 18 18 H 1.48501 * 109.46983 * 60.00173 * 15 13 11 19 19 C 1.50694 * 109.47516 * 7.21045 * 3 2 1 20 20 C 1.38232 * 120.00432 * 79.72731 * 19 3 2 21 21 C 1.38238 * 120.00237 * 179.79309 * 20 19 3 22 22 C 1.38234 * 119.99765 * 0.43301 * 21 20 19 23 23 C 1.38237 * 120.00172 * 359.82032 * 22 21 20 24 24 C 1.38233 * 119.99962 * 359.97424 * 23 22 21 25 25 H 4.18744 * 15.04053 * 359.97438 * 4 2 1 26 26 H 0.96999 * 119.99408 * 264.99465 * 5 3 2 27 27 H 1.09002 * 109.47014 * 66.34235 * 10 8 6 28 28 H 1.08996 * 109.47848 * 186.35004 * 10 8 6 29 29 H 1.09005 * 109.46715 * 306.35049 * 10 8 6 30 30 H 0.97000 * 119.99742 * 354.94277 * 14 13 11 31 31 H 1.07999 * 119.99853 * 359.97438 * 20 19 3 32 32 H 1.07997 * 119.99795 * 180.27124 * 21 20 19 33 33 H 1.08005 * 119.99857 * 179.83611 * 22 21 20 34 34 H 1.08005 * 120.00034 * 180.02562 * 23 22 21 35 35 H 1.08002 * 120.00183 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.3990 0.9475 5 7 3.1339 0.8362 -1.1001 6 6 3.2619 2.1670 -0.9299 7 8 2.9729 2.6730 0.1337 8 6 3.7633 3.0265 -2.0617 9 1 3.0904 2.9336 -2.9142 10 6 5.1659 2.5690 -2.4670 11 6 3.8129 4.4652 -1.6161 12 1 3.5994 4.7199 -0.5884 13 6 4.1307 5.4564 -2.5202 14 7 4.5099 6.6406 -2.0916 15 14 4.0229 5.1175 -4.3540 16 1 4.4142 6.3364 -5.1066 17 1 4.9393 4.0034 -4.7063 18 1 2.6299 4.7430 -4.7071 19 6 3.1490 -1.4086 -0.1783 20 6 3.1784 -1.9779 -1.4376 21 6 3.6439 -3.2692 -1.6017 22 6 4.0715 -3.9943 -0.5053 23 6 4.0372 -3.4268 0.7548 24 6 3.5757 -2.1341 0.9183 25 1 -1.0501 0.0003 -0.0006 26 1 3.3648 0.4315 -1.9509 27 1 5.1122 1.5679 -2.8947 28 1 5.5737 3.2585 -3.2061 29 1 5.8113 2.5546 -1.5886 30 1 4.4957 6.8402 -1.1424 31 1 2.8405 -1.4128 -2.2937 32 1 3.6710 -3.7123 -2.5862 33 1 4.4327 -5.0041 -0.6331 34 1 4.3717 -3.9933 1.6114 35 1 3.5492 -1.6906 1.9027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855007702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:38 Heat of formation + Delta-G solvation = 16.325854 kcal Electronic energy + Delta-G solvation = -18170.438043 eV Core-core repulsion = 15326.832792 eV Total energy + Delta-G solvation = -2843.605250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20982 -39.96195 -36.74761 -35.82607 -33.88913 -32.89843 -32.01412 -31.71621 -27.67892 -26.81233 -24.41470 -23.50686 -22.58482 -21.14961 -19.68098 -19.32541 -18.41562 -17.54343 -17.02176 -16.34366 -16.09412 -15.87206 -15.44622 -15.11359 -14.95641 -14.35079 -14.26401 -14.11496 -13.88125 -13.48883 -13.42130 -12.97649 -12.39304 -12.35960 -11.99396 -11.98238 -11.68941 -11.58701 -11.25764 -11.00504 -10.67285 -10.44645 -10.30591 -9.86010 -9.77837 -8.78909 -6.37465 0.29960 0.46188 1.47931 1.49380 1.58643 1.73365 1.76875 1.81491 2.50120 2.53474 2.82215 3.07979 3.42216 3.71957 3.87777 4.09498 4.11084 4.28434 4.34740 4.43414 4.59559 4.66693 4.69125 4.82541 4.93290 5.00351 5.10465 5.13337 5.29875 5.50647 5.51931 5.58783 5.61437 5.82043 6.04610 6.05065 6.55779 6.58443 6.62060 7.32804 7.44868 8.62024 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.005177 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.158360 B = 5407.140827 C = 5770.461992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.235 4.235 3 C 0.295 3.705 4 H 0.087 0.913 5 N -0.713 5.713 6 C 0.528 3.472 7 O -0.584 6.584 8 C -0.002 4.002 9 H 0.068 0.932 10 C -0.138 4.138 11 C -0.601 4.601 12 H 0.013 0.987 13 C -0.024 4.024 14 N -0.937 5.937 15 Si 1.087 2.913 16 H -0.291 1.291 17 H -0.223 1.223 18 H -0.262 1.262 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.120 4.120 25 H 0.253 0.747 26 H 0.414 0.586 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.247 0.753 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -25.822 -2.340 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.236 4.236 3 C 0.191 3.809 4 H 0.104 0.896 5 N -0.368 5.368 6 C 0.317 3.683 7 O -0.462 6.462 8 C -0.024 4.024 9 H 0.086 0.914 10 C -0.195 4.195 11 C -0.639 4.639 12 H 0.031 0.969 13 C -0.220 4.220 14 N -0.573 5.573 15 Si 0.906 3.094 16 H -0.217 1.217 17 H -0.146 1.146 18 H -0.187 1.187 19 C -0.100 4.100 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.138 4.138 25 H 0.269 0.731 26 H 0.253 0.747 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.165 0.835 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.160 -24.787 -3.038 25.066 hybrid contribution -0.552 0.248 2.124 2.209 sum -2.713 -24.539 -0.914 24.705 Atomic orbital electron populations 1.25789 0.96722 0.98664 0.97816 1.23655 0.95170 1.01988 1.02781 1.16339 0.83718 0.88890 0.91986 0.89550 1.46119 1.67722 1.06328 1.16607 1.21410 0.74953 0.82154 0.89759 1.90552 1.51188 1.74142 1.30355 1.19197 0.96358 0.93474 0.93390 0.91417 1.22063 0.95589 1.01113 1.00771 1.22030 1.52585 0.92636 0.96600 0.96857 1.27541 0.91120 0.92424 1.10947 1.70996 1.43931 1.25822 1.16501 0.83617 0.79311 0.77561 0.68945 1.21672 1.14649 1.18695 1.19582 1.01576 0.93197 0.95661 1.21128 0.99799 0.96542 0.96111 1.21467 0.97917 0.93540 1.00533 1.21606 0.98482 1.01092 0.92245 1.21438 0.98986 0.94382 0.98928 1.21194 0.98867 0.95637 0.98148 0.73072 0.74745 0.90173 0.91931 0.94710 0.94447 0.85296 0.83155 0.83034 0.83483 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 19.25 74.32 1.43 -3.31 16 2 C -0.23 -7.59 12.81 31.12 0.40 -7.19 16 3 C 0.30 9.46 2.62 42.43 0.11 9.57 16 4 H 0.09 3.16 7.44 -2.38 -0.02 3.14 16 5 N -0.71 -24.38 4.90 -454.84 -2.23 -26.60 16 6 C 0.53 24.38 7.09 87.66 0.62 25.00 16 7 O -0.58 -33.00 15.13 -3.03 -0.05 -33.04 16 8 C 0.00 -0.11 2.22 -12.29 -0.03 -0.14 16 9 H 0.07 2.90 6.80 -2.39 -0.02 2.88 16 10 C -0.14 -5.39 8.72 71.98 0.63 -4.76 16 11 C -0.60 -36.39 8.63 25.60 0.22 -36.17 16 12 H 0.01 0.94 7.02 -2.91 -0.02 0.92 16 13 C -0.02 -1.41 5.29 84.65 0.45 -0.96 16 14 N -0.94 -60.94 13.70 21.45 0.29 -60.65 16 15 Si 1.09 47.87 26.29 68.60 1.80 49.67 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.22 -8.04 5.76 99.48 0.57 -7.47 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 C -0.10 -2.47 4.92 -19.87 -0.10 -2.57 16 20 C -0.12 -2.39 9.04 22.27 0.20 -2.19 16 21 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 22 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 23 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 24 C -0.12 -2.62 9.67 22.27 0.22 -2.40 16 25 H 0.25 4.52 7.80 -4.41 -0.03 4.49 16 26 H 0.41 11.12 6.43 -92.71 -0.60 10.52 16 27 H 0.08 2.29 7.75 -2.39 -0.02 2.27 16 28 H 0.06 2.49 4.88 -2.39 -0.01 2.48 16 29 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.25 16.68 8.73 -92.71 -0.81 15.87 16 31 H 0.13 2.35 6.93 -2.91 -0.02 2.33 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.12 2.59 8.04 -2.91 -0.02 2.57 16 Total: -1.00 -82.03 304.49 4.98 -77.05 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.33 Total: 23.46 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.82 Total: -29.88 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -1.93 Total: -87.26 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.04 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.80 Total: 49.67 kcal Total: -82.03 4.98 -77.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855007702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.377 kcal (2) G-P(sol) polarization free energy of solvation -82.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds