Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 C 1.53001 * 109.46986 * 239.99828 * 2 1 3 5 5 C 1.47201 * 109.47086 * 119.99837 * 2 1 3 6 6 C 2.64602 * 109.46932 * 119.99982 * 2 1 3 7 7 C 4.11803 * 109.46987 * 119.99931 * 2 1 3 8 8 N 1.46505 * 109.46960 * 318.41553 * 7 6 5 9 9 C 1.38855 * 119.99648 * 179.97438 * 8 7 6 10 10 C 1.39568 * 119.84643 * 359.73541 * 9 8 7 11 11 C 1.36336 * 120.16398 * 179.71732 * 10 9 8 12 12 C 1.40887 * 119.83522 * 0.54986 * 11 10 9 13 13 C 1.41138 * 120.15888 * 179.70431 * 12 11 10 14 14 H 1.07998 * 120.00076 * 204.63105 * 13 12 11 15 15 C 1.39867 * 119.99657 * 24.62602 * 13 12 11 16 16 N 1.30899 * 120.00270 * 17.95962 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 197.95959 * 15 13 12 18 18 H 1.48496 * 109.47088 * 60.00108 * 17 15 13 19 19 H 1.48501 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46731 * 299.99953 * 17 15 13 21 21 C 1.40883 * 119.68869 * 359.72272 * 12 11 10 22 22 C 1.36343 * 119.84059 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.46935 * 299.99923 * 1 2 3 24 24 H 1.08999 * 109.46970 * 60.00012 * 1 2 3 25 25 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46881 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46775 * 300.00290 * 3 2 1 28 28 H 1.08999 * 109.46790 * 59.99680 * 3 2 1 29 29 H 1.09001 * 109.47166 * 299.99769 * 4 2 1 30 30 H 1.08999 * 109.47135 * 60.00261 * 4 2 1 31 31 H 1.08999 * 109.46710 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46893 * 198.42289 * 7 6 5 33 33 H 1.08998 * 109.47429 * 78.41918 * 7 6 5 34 34 H 0.96996 * 120.00184 * 0.02562 * 8 7 6 35 35 H 1.08003 * 119.91446 * 359.97233 * 10 9 8 36 36 H 1.08000 * 120.08688 * 180.27597 * 11 10 9 37 37 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 38 38 H 1.08003 * 120.08598 * 179.97438 * 21 12 11 39 39 H 1.07998 * 119.92670 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4120 -1.2474 2.1605 7 6 2.9026 -1.9412 3.3624 8 7 1.7896 -2.1567 4.2904 9 6 2.0103 -2.7980 5.5021 10 6 3.2925 -3.2409 5.8302 11 6 3.5176 -3.8662 7.0206 12 6 2.4497 -4.0752 7.9155 13 6 2.6738 -4.7274 9.1469 14 1 1.8619 -5.2381 9.6431 15 6 3.9475 -4.7122 9.7246 16 7 4.8319 -3.8287 9.3362 17 14 4.3865 -5.9527 11.0506 18 1 4.2565 -7.3275 10.5047 19 1 5.7849 -5.7266 11.4963 20 1 3.4669 -5.7894 12.2051 21 6 1.1569 -3.6306 7.5751 22 6 0.9477 -3.0012 6.3839 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 3.6667 -1.3331 3.8465 33 1 3.3299 -2.9028 3.0779 34 1 0.8985 -1.8521 4.0581 35 1 4.1093 -3.0842 5.1411 36 1 4.5112 -4.2044 7.2751 37 1 5.7151 -3.8180 9.7371 38 1 0.3335 -3.7879 8.2561 39 1 -0.0429 -2.6602 6.1214 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305897456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = 52.476571 kcal Electronic energy + Delta-G solvation = -17422.450034 eV Core-core repulsion = 14716.245491 eV Total energy + Delta-G solvation = -2706.204543 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.03397 -37.57001 -35.36909 -33.29097 -31.62526 -29.46058 -28.78407 -27.53227 -27.52263 -26.25036 -23.87881 -21.60328 -20.88327 -19.97220 -17.19896 -16.94360 -15.98193 -15.13578 -14.94686 -14.63013 -14.45968 -14.07926 -13.91255 -13.57045 -12.73638 -12.65561 -12.59492 -12.53357 -11.97411 -11.94622 -11.77355 -11.60986 -11.47531 -11.41579 -11.26901 -11.00526 -10.89330 -10.50343 -10.01014 -9.86245 -9.68187 -9.26878 -9.17992 -8.52358 -7.49061 -6.63739 -6.40174 -4.02968 2.60992 2.75756 2.93825 3.10953 3.15080 3.18368 3.36720 4.00236 4.06194 4.54140 4.72576 4.77004 4.77852 4.83422 5.34875 5.36128 5.40627 5.50334 5.60033 5.60712 5.79327 5.79948 5.81999 5.92929 6.01024 6.04725 6.05706 6.27843 6.31865 6.90656 6.94349 7.20499 7.36405 7.53718 7.65377 7.69495 7.84245 8.15572 8.28687 8.48076 8.68961 8.79569 9.06642 9.15526 10.38108 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.051990 B = 0.003069 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.432803 B = 9122.329154 C = 9404.546455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.249 3.751 8 N -0.759 5.759 9 C 0.089 3.911 10 C -0.164 4.164 11 C -0.125 4.125 12 C 0.076 3.924 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.807 5.807 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.187 4.187 22 C -0.156 4.156 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.387 0.613 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.277 0.723 38 H 0.092 0.908 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 6.399 -15.854 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.048 3.952 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.175 4.175 6 C -0.177 4.177 7 C 0.125 3.875 8 N -0.395 5.395 9 C -0.007 4.007 10 C -0.186 4.186 11 C -0.145 4.145 12 C 0.073 3.927 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.434 5.434 17 Si 0.729 3.271 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.207 4.207 22 C -0.178 4.178 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.219 0.781 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.866 6.458 -15.828 17.334 hybrid contribution 0.012 -0.363 0.623 0.721 sum -2.855 6.095 -15.205 16.628 Atomic orbital electron populations 1.21872 0.93014 1.02523 1.02263 1.17649 0.95361 0.93896 0.88329 1.21883 1.01509 0.94062 1.02246 1.21878 1.01498 1.00536 0.95757 1.22094 0.98878 1.00582 0.95954 1.22582 1.00774 0.98534 0.95811 1.17859 0.90056 0.97000 0.82590 1.43796 1.08655 1.69142 1.17946 1.17327 0.94244 1.02217 0.86938 1.20100 0.93669 1.06016 0.98811 1.20931 1.00042 1.01427 0.92053 1.17500 0.90691 0.91643 0.92903 1.19342 0.95111 1.30706 1.04672 0.90943 1.25800 0.96155 0.94692 0.97409 1.69845 1.05849 1.28868 1.38866 0.86457 0.77830 0.81854 0.81006 1.19076 1.20586 1.19269 1.20544 0.97497 1.05625 0.97043 1.19802 0.95550 1.06370 0.96056 0.92157 0.91735 0.92170 0.92235 0.91772 0.92173 0.92197 0.91760 0.92240 0.91087 0.91143 0.78089 0.89292 0.86300 0.91243 0.88980 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.43 37.16 0.31 -0.90 16 2 C 0.05 0.47 0.95 -157.29 -0.15 0.32 16 3 C -0.14 -1.20 8.43 37.16 0.31 -0.88 16 4 C -0.14 -1.17 8.43 37.16 0.31 -0.86 16 5 C -0.17 -2.32 11.77 -37.12 -0.44 -2.76 16 6 C -0.18 -2.64 13.46 -37.12 -0.50 -3.14 16 7 C 0.25 4.03 5.36 -6.83 -0.04 3.99 16 8 N -0.76 -14.03 5.68 -61.35 -0.35 -14.38 16 9 C 0.09 1.99 6.67 -83.69 -0.56 1.43 16 10 C -0.16 -3.87 9.23 -39.77 -0.37 -4.24 16 11 C -0.12 -3.29 8.64 -39.26 -0.34 -3.63 16 12 C 0.08 2.06 5.57 -106.79 -0.60 1.46 16 13 C -0.47 -12.77 9.03 -37.87 -0.34 -13.11 16 14 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 15 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 16 N -0.81 -21.52 10.96 55.54 0.61 -20.91 16 17 Si 0.90 19.31 29.60 -169.99 -5.03 14.28 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 C -0.19 -4.68 9.74 -39.26 -0.38 -5.07 16 22 C -0.16 -3.57 9.82 -39.77 -0.39 -3.96 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 33 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 34 H 0.39 6.61 8.45 -40.82 -0.34 6.27 16 35 H 0.09 1.88 6.68 -52.48 -0.35 1.53 16 36 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 37 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -28.56 330.96 -9.07 -37.63 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.04 Total: 7.88 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -3.25 Total: -29.49 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.26 Total: -35.29 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.56 -9.07 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305897456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.106 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds