Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 C 1.53001 * 109.46986 * 239.99828 * 2 1 3 5 5 C 1.47201 * 109.47086 * 119.99837 * 2 1 3 6 6 C 2.64602 * 109.46932 * 119.99982 * 2 1 3 7 7 C 4.11803 * 109.46987 * 119.99931 * 2 1 3 8 8 N 1.46505 * 109.46960 * 318.41553 * 7 6 5 9 9 C 1.38855 * 119.99648 * 179.97438 * 8 7 6 10 10 C 1.39568 * 119.84643 * 359.73541 * 9 8 7 11 11 C 1.36336 * 120.16398 * 179.71732 * 10 9 8 12 12 C 1.40887 * 119.83522 * 0.54986 * 11 10 9 13 13 C 1.41138 * 120.15888 * 179.70431 * 12 11 10 14 14 H 1.07998 * 120.00076 * 204.63105 * 13 12 11 15 15 C 1.39867 * 119.99657 * 24.62602 * 13 12 11 16 16 N 1.30899 * 120.00270 * 17.95962 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 197.95959 * 15 13 12 18 18 H 1.48496 * 109.47088 * 60.00108 * 17 15 13 19 19 H 1.48501 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46731 * 299.99953 * 17 15 13 21 21 C 1.40883 * 119.68869 * 359.72272 * 12 11 10 22 22 C 1.36343 * 119.84059 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.46935 * 299.99923 * 1 2 3 24 24 H 1.08999 * 109.46970 * 60.00012 * 1 2 3 25 25 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46881 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46775 * 300.00290 * 3 2 1 28 28 H 1.08999 * 109.46790 * 59.99680 * 3 2 1 29 29 H 1.09001 * 109.47166 * 299.99769 * 4 2 1 30 30 H 1.08999 * 109.47135 * 60.00261 * 4 2 1 31 31 H 1.08999 * 109.46710 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46893 * 198.42289 * 7 6 5 33 33 H 1.08998 * 109.47429 * 78.41918 * 7 6 5 34 34 H 0.96996 * 120.00184 * 0.02562 * 8 7 6 35 35 H 1.08003 * 119.91446 * 359.97233 * 10 9 8 36 36 H 1.08000 * 120.08688 * 180.27597 * 11 10 9 37 37 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 38 38 H 1.08003 * 120.08598 * 179.97438 * 21 12 11 39 39 H 1.07998 * 119.92670 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4120 -1.2474 2.1605 7 6 2.9026 -1.9412 3.3624 8 7 1.7896 -2.1567 4.2904 9 6 2.0103 -2.7980 5.5021 10 6 3.2925 -3.2409 5.8302 11 6 3.5176 -3.8662 7.0206 12 6 2.4497 -4.0752 7.9155 13 6 2.6738 -4.7274 9.1469 14 1 1.8619 -5.2381 9.6431 15 6 3.9475 -4.7122 9.7246 16 7 4.8319 -3.8287 9.3362 17 14 4.3865 -5.9527 11.0506 18 1 4.2565 -7.3275 10.5047 19 1 5.7849 -5.7266 11.4963 20 1 3.4669 -5.7894 12.2051 21 6 1.1569 -3.6306 7.5751 22 6 0.9477 -3.0012 6.3839 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 3.6667 -1.3331 3.8465 33 1 3.3299 -2.9028 3.0779 34 1 0.8985 -1.8521 4.0581 35 1 4.1093 -3.0842 5.1411 36 1 4.5112 -4.2044 7.2751 37 1 5.7151 -3.8180 9.7371 38 1 0.3335 -3.7879 8.2561 39 1 -0.0429 -2.6602 6.1214 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305897456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = 38.831352 kcal Electronic energy + Delta-G solvation = -17423.041735 eV Core-core repulsion = 14716.245491 eV Total energy + Delta-G solvation = -2706.796244 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 257.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81998 -38.41311 -36.98817 -35.05696 -33.00425 -31.36984 -30.51975 -28.18462 -28.17790 -27.80565 -25.66753 -23.13744 -22.25090 -21.67502 -19.15754 -18.34852 -17.22941 -16.84188 -16.48469 -15.71215 -15.67879 -15.21515 -15.06034 -15.01608 -14.50164 -14.25911 -13.75033 -13.59297 -13.35582 -13.29061 -13.15109 -12.73193 -12.70424 -12.62006 -12.41857 -12.30269 -12.16296 -12.11429 -11.61063 -11.27824 -11.20106 -10.95193 -10.82909 -10.26525 -9.42108 -8.55628 -8.22092 -6.02225 1.10078 1.17518 1.40856 1.46234 1.51738 1.59383 1.67659 2.27762 2.83758 2.92818 3.19297 3.84089 4.00808 4.02160 4.06083 4.40498 4.45370 4.50820 4.60046 4.60467 4.74520 4.75579 4.83568 4.96687 4.96825 5.02634 5.10261 5.12512 5.22342 5.26491 5.37233 5.37959 5.44363 5.65563 5.78011 5.93856 6.17851 6.36730 6.53746 6.64534 6.82847 7.06899 7.08185 7.25134 8.47884 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.051990 B = 0.003069 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.432803 B = 9122.329154 C = 9404.546455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.038 3.962 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.220 4.220 7 C 0.252 3.748 8 N -0.751 5.751 9 C 0.106 3.894 10 C -0.173 4.173 11 C -0.144 4.144 12 C 0.038 3.962 13 C -0.506 4.506 14 H 0.069 0.931 15 C 0.032 3.968 16 N -0.840 5.840 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.196 4.196 22 C -0.162 4.162 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.283 0.717 38 H 0.099 0.901 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 7.172 -17.671 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.151 4.151 6 C -0.221 4.221 7 C 0.128 3.872 8 N -0.386 5.386 9 C 0.008 3.992 10 C -0.195 4.195 11 C -0.164 4.164 12 C 0.035 3.965 13 C -0.537 4.537 14 H 0.087 0.913 15 C -0.180 4.180 16 N -0.468 5.468 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.186 1.186 21 C -0.216 4.216 22 C -0.184 4.184 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.230 0.770 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.557 7.253 -17.685 19.443 hybrid contribution 0.135 -0.472 0.970 1.087 sum -3.422 6.782 -16.715 18.360 Atomic orbital electron populations 1.21882 0.91895 1.02460 1.03271 1.18010 0.96266 0.94523 0.87403 1.21890 1.01296 0.93129 1.03207 1.21882 1.01310 1.00361 0.95904 1.23011 0.96938 0.99174 0.95941 1.22400 1.02857 1.00254 0.96552 1.17805 0.89231 0.97394 0.82740 1.43833 1.09955 1.67909 1.16922 1.17425 0.93526 1.00480 0.87816 1.20279 0.95083 1.05739 0.98373 1.20877 0.99274 1.02949 0.93303 1.17840 0.91909 0.93157 0.93617 1.19583 0.96200 1.32350 1.05549 0.91276 1.26630 0.95554 0.96156 0.99689 1.69909 1.06356 1.30183 1.40351 0.85335 0.77921 0.78925 0.77944 1.18745 1.19450 1.18629 1.20752 0.97024 1.05705 0.98137 1.20092 0.97163 1.05783 0.95373 0.92862 0.89089 0.92777 0.92629 0.89137 0.92948 0.92786 0.89157 0.92594 0.91218 0.90853 0.77044 0.87279 0.88039 0.90672 0.88318 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.43 71.98 0.61 -1.42 16 2 C 0.04 0.65 0.95 -53.98 -0.05 0.60 16 3 C -0.14 -1.99 8.43 71.98 0.61 -1.38 16 4 C -0.14 -1.92 8.43 71.98 0.61 -1.31 16 5 C -0.15 -3.74 11.77 31.13 0.37 -3.38 16 6 C -0.22 -6.35 13.46 31.13 0.42 -5.93 16 7 C 0.25 7.91 5.36 84.57 0.45 8.37 16 8 N -0.75 -26.70 5.68 -348.02 -1.98 -28.68 16 9 C 0.11 4.65 6.67 38.67 0.26 4.90 16 10 C -0.17 -8.20 9.23 22.15 0.20 -8.00 16 11 C -0.14 -7.84 8.64 22.47 0.19 -7.65 16 12 C 0.04 2.12 5.57 -21.27 -0.12 2.00 16 13 C -0.51 -28.60 9.03 23.38 0.21 -28.39 16 14 H 0.07 3.78 7.91 -2.91 -0.02 3.75 16 15 C 0.03 1.69 5.13 85.23 0.44 2.13 16 16 N -0.84 -46.09 10.96 21.82 0.24 -45.85 16 17 Si 0.98 40.24 29.60 68.60 2.03 42.27 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 C -0.20 -9.96 9.74 22.48 0.22 -9.74 16 22 C -0.16 -7.28 9.82 22.15 0.22 -7.07 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 2.21 7.94 -2.39 -0.02 2.20 16 33 H 0.07 2.27 7.91 -2.39 -0.02 2.25 16 34 H 0.40 12.78 8.45 -92.71 -0.78 12.00 16 35 H 0.11 4.61 6.68 -2.91 -0.02 4.59 16 36 H 0.10 5.79 6.16 -2.91 -0.02 5.77 16 37 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 38 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -62.66 330.96 5.17 -57.49 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.25 Total: 31.02 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 4.63 Total: -56.25 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -1.74 Total: -74.53 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -62.66 5.17 -57.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305897456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.317 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds