Wall clock time and date at job start Mon Mar 30 2020 07:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 239.99875 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00067 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46900 * 109.47354 * 120.00022 * 2 1 3 14 14 C 1.46903 * 111.00037 * 275.00123 * 13 2 1 15 15 C 1.52996 * 109.47150 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.27702 * 307.11933 * 15 14 13 17 17 C 1.53075 * 110.32362 * 184.99819 * 15 14 13 18 18 C 1.44825 * 115.41616 * 146.54929 * 17 15 14 19 19 C 1.55244 * 110.44948 * 64.06547 * 18 17 15 20 20 S 1.79260 * 109.69244 * 286.73446 * 19 18 17 21 21 C 1.82326 * 106.80563 * 88.65482 * 20 19 18 22 22 C 1.51413 * 110.32772 * 69.41345 * 15 14 13 23 23 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47168 * 300.00070 * 1 2 3 25 25 H 1.08999 * 109.47050 * 59.99651 * 1 2 3 26 26 H 1.09007 * 109.46922 * 54.99769 * 4 2 1 27 27 H 1.09003 * 109.46836 * 295.00525 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.00895 * 111.00450 * 151.04612 * 13 2 1 30 30 H 1.09000 * 109.46742 * 300.00236 * 14 13 2 31 31 H 1.09000 * 109.46876 * 59.99400 * 14 13 2 32 32 H 1.08999 * 108.29613 * 268.09119 * 17 15 14 33 33 H 1.08999 * 108.29468 * 25.01264 * 17 15 14 34 34 H 1.09003 * 109.30678 * 184.36518 * 18 17 15 35 35 H 1.08997 * 109.30744 * 303.96304 * 18 17 15 36 36 H 1.09003 * 109.43299 * 46.80076 * 19 18 17 37 37 H 1.08994 * 109.43262 * 166.66263 * 19 18 17 38 38 H 1.08997 * 109.18283 * 79.45912 * 21 20 19 39 39 H 1.09003 * 109.18258 * 198.75275 * 21 20 19 40 40 H 1.08998 * 109.52336 * 344.20120 * 22 15 14 41 41 H 1.09001 * 109.52647 * 104.41538 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8370 -3.3000 9 14 6.0919 -1.0603 -2.4374 10 1 6.4697 0.1624 -3.1907 11 1 6.6416 -0.9828 -1.0600 12 1 6.6444 -2.2554 -3.1243 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5951 -0.5332 3.5744 16 1 2.0009 -1.4318 3.7401 17 6 2.5512 0.3686 4.8106 18 6 2.2648 -0.3040 6.0608 19 6 3.3976 -1.3067 6.4092 20 16 3.2913 -2.7361 5.3328 21 6 4.2778 -2.3527 3.8482 22 6 4.0564 -0.8894 3.4005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6053 -0.2618 -2.1370 27 1 1.7515 -1.7715 -1.2055 28 1 4.0606 -2.2432 -4.0358 29 1 2.9173 -1.1205 1.0288 30 1 2.7588 1.0462 2.1181 31 1 1.0871 0.6163 2.5525 32 1 3.5154 0.8683 4.9040 33 1 1.7896 1.1318 4.6505 34 1 2.1807 0.4357 6.8570 35 1 1.3231 -0.8456 5.9712 36 1 4.3648 -0.8223 6.2744 37 1 3.2937 -1.6251 7.4464 38 1 5.3340 -2.5031 4.0714 39 1 3.9837 -3.0223 3.0399 40 1 4.3350 -0.7830 2.3521 41 1 4.6685 -0.2251 4.0105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690622527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:45 Heat of formation + Delta-G solvation = -27.588226 kcal Electronic energy + Delta-G solvation = -17917.843393 eV Core-core repulsion = 15343.610931 eV Total energy + Delta-G solvation = -2574.232462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.56765 -36.13022 -33.34770 -32.47618 -30.64171 -28.58919 -27.37816 -25.63519 -23.54748 -22.69315 -21.42223 -20.16003 -19.27266 -16.36412 -16.35303 -15.56236 -15.37418 -14.74114 -14.52045 -14.33126 -14.06662 -13.72379 -13.26261 -12.86749 -12.65967 -12.39049 -11.90335 -11.81629 -11.51771 -11.37224 -11.24282 -11.22544 -10.93366 -10.72385 -10.64084 -10.49313 -10.32575 -10.24970 -10.10582 -9.61504 -9.19446 -9.06543 -8.40835 -7.60974 -7.48276 -6.03982 -4.07099 1.70927 2.70813 3.27232 3.34459 3.35534 4.40973 4.51605 4.55361 4.86792 4.90456 4.99686 5.09803 5.25898 5.34249 5.38406 5.47888 5.56475 5.74450 5.82933 5.94248 5.95485 5.98412 6.01536 6.12293 6.15444 6.22249 6.27503 6.30633 6.41806 6.55999 6.70949 6.96512 6.97698 7.55411 7.63611 7.96408 8.10119 8.31373 8.38092 8.99038 9.56828 11.06934 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.005690 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.421550 B = 4919.709019 C = 5711.364857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.050 0.950 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.069 3.931 15 C -0.095 4.095 16 H 0.108 0.892 17 C -0.121 4.121 18 C -0.108 4.108 19 C -0.093 4.093 20 S -0.260 6.260 21 C -0.078 4.078 22 C -0.123 4.123 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.046 0.954 26 H 0.020 0.980 27 H 0.026 0.974 28 H 0.261 0.739 29 H 0.352 0.648 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 2.858 17.499 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.561 4.561 6 H 0.068 0.932 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.212 1.212 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.114 4.114 16 H 0.126 0.874 17 C -0.159 4.159 18 C -0.147 4.147 19 C -0.241 4.241 20 S -0.033 6.033 21 C -0.226 4.226 22 C -0.162 4.162 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.174 0.826 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.968 1.591 17.698 17.878 hybrid contribution 2.651 1.817 -0.644 3.278 sum 0.683 3.409 17.054 17.404 Atomic orbital electron populations 1.21787 0.96777 1.01321 0.99360 1.21599 0.93353 0.95753 0.91516 0.95532 1.19282 0.95343 0.96232 0.90871 1.21150 0.92250 1.34467 1.08260 0.93177 1.24982 0.98120 0.95201 0.95740 1.69959 1.35470 1.35546 1.11889 0.86666 0.86044 0.77573 0.78123 1.20764 1.19974 1.21152 1.60564 1.34606 1.32105 1.04304 1.21963 0.99263 0.93764 0.91069 1.21309 0.95962 1.00466 0.93709 0.87434 1.20357 1.02006 0.98955 0.94587 1.20602 0.98480 0.97973 0.97681 1.23580 1.02083 0.97596 1.00850 1.86158 1.70845 1.26246 1.20043 1.23995 1.00878 1.00964 0.96732 1.22159 0.97258 0.93983 1.02817 0.92622 0.94547 0.93459 0.96133 0.95566 0.92937 0.82638 0.96301 0.91911 0.92717 0.92106 0.91455 0.90662 0.90217 0.88365 0.90496 0.87233 0.90040 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.41 37.16 0.35 -2.10 16 2 C 0.09 1.82 2.59 -67.71 -0.18 1.64 16 3 H 0.03 0.57 7.80 -51.93 -0.40 0.17 16 4 C 0.02 0.51 4.57 -27.89 -0.13 0.38 16 5 C -0.52 -14.22 8.12 -34.44 -0.28 -14.50 16 6 H 0.05 1.32 7.49 -52.49 -0.39 0.93 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.68 -12.93 6.31 -106.73 -0.67 -13.61 16 14 C 0.07 1.09 4.66 -3.82 -0.02 1.07 16 15 C -0.10 -1.26 2.13 -91.38 -0.19 -1.46 16 16 H 0.11 1.58 6.24 -51.93 -0.32 1.25 16 17 C -0.12 -1.32 4.56 -30.52 -0.14 -1.46 16 18 C -0.11 -1.03 5.49 -29.37 -0.16 -1.19 16 19 C -0.09 -0.91 5.94 38.35 0.23 -0.68 16 20 S -0.26 -3.22 20.08 -107.50 -2.16 -5.38 16 21 C -0.08 -0.99 6.60 38.01 0.25 -0.74 16 22 C -0.12 -1.62 5.10 -26.68 -0.14 -1.75 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.35 7.20 5.75 -39.29 -0.23 6.98 16 30 H 0.02 0.31 8.04 -51.93 -0.42 -0.11 16 31 H 0.06 0.95 7.31 -51.93 -0.38 0.57 16 32 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 33 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 0.76 7.89 -51.76 -0.41 0.35 16 37 H 0.10 0.84 8.14 -51.76 -0.42 0.42 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.24 6.50 -51.93 -0.34 0.90 16 41 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -28.34 322.07 -10.06 -38.40 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.30 Total: 4.29 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.50 Total: -19.16 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.06 Total: -39.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.16 Total: -5.38 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.34 -10.06 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690622527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.813 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds