Wall clock time and date at job start Mon Mar 30 2020 07:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 239.99875 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00067 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46900 * 109.47354 * 120.00022 * 2 1 3 14 14 C 1.46903 * 111.00037 * 275.00123 * 13 2 1 15 15 C 1.52996 * 109.47150 * 179.97438 * 14 13 2 16 16 H 1.09001 * 110.27702 * 307.11933 * 15 14 13 17 17 C 1.53075 * 110.32362 * 184.99819 * 15 14 13 18 18 C 1.44825 * 115.41616 * 146.54929 * 17 15 14 19 19 C 1.55244 * 110.44948 * 64.06547 * 18 17 15 20 20 S 1.79260 * 109.69244 * 286.73446 * 19 18 17 21 21 C 1.82326 * 106.80563 * 88.65482 * 20 19 18 22 22 C 1.51413 * 110.32772 * 69.41345 * 15 14 13 23 23 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47168 * 300.00070 * 1 2 3 25 25 H 1.08999 * 109.47050 * 59.99651 * 1 2 3 26 26 H 1.09007 * 109.46922 * 54.99769 * 4 2 1 27 27 H 1.09003 * 109.46836 * 295.00525 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.00895 * 111.00450 * 151.04612 * 13 2 1 30 30 H 1.09000 * 109.46742 * 300.00236 * 14 13 2 31 31 H 1.09000 * 109.46876 * 59.99400 * 14 13 2 32 32 H 1.08999 * 108.29613 * 268.09119 * 17 15 14 33 33 H 1.08999 * 108.29468 * 25.01264 * 17 15 14 34 34 H 1.09003 * 109.30678 * 184.36518 * 18 17 15 35 35 H 1.08997 * 109.30744 * 303.96304 * 18 17 15 36 36 H 1.09003 * 109.43299 * 46.80076 * 19 18 17 37 37 H 1.08994 * 109.43262 * 166.66263 * 19 18 17 38 38 H 1.08997 * 109.18283 * 79.45912 * 21 20 19 39 39 H 1.09003 * 109.18258 * 198.75275 * 21 20 19 40 40 H 1.08998 * 109.52336 * 344.20120 * 22 15 14 41 41 H 1.09001 * 109.52647 * 104.41538 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8370 -3.3000 9 14 6.0919 -1.0603 -2.4374 10 1 6.4697 0.1624 -3.1907 11 1 6.6416 -0.9828 -1.0600 12 1 6.6444 -2.2554 -3.1243 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5951 -0.5332 3.5744 16 1 2.0009 -1.4318 3.7401 17 6 2.5512 0.3686 4.8106 18 6 2.2648 -0.3040 6.0608 19 6 3.3976 -1.3067 6.4092 20 16 3.2913 -2.7361 5.3328 21 6 4.2778 -2.3527 3.8482 22 6 4.0564 -0.8894 3.4005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6053 -0.2618 -2.1370 27 1 1.7515 -1.7715 -1.2055 28 1 4.0606 -2.2432 -4.0358 29 1 2.9173 -1.1205 1.0288 30 1 2.7588 1.0462 2.1181 31 1 1.0871 0.6163 2.5525 32 1 3.5154 0.8683 4.9040 33 1 1.7896 1.1318 4.6505 34 1 2.1807 0.4357 6.8570 35 1 1.3231 -0.8456 5.9712 36 1 4.3648 -0.8223 6.2744 37 1 3.2937 -1.6251 7.4464 38 1 5.3340 -2.5031 4.0714 39 1 3.9837 -3.0223 3.0399 40 1 4.3350 -0.7830 2.3521 41 1 4.6685 -0.2251 4.0105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690622527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:44 Heat of formation + Delta-G solvation = -43.186881 kcal Electronic energy + Delta-G solvation = -17918.519801 eV Core-core repulsion = 15343.610931 eV Total energy + Delta-G solvation = -2574.908870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68231 -37.63577 -34.89754 -33.97842 -32.04555 -29.73967 -29.27705 -26.68886 -25.20089 -24.18878 -22.38422 -21.33618 -20.83712 -18.51471 -17.41084 -16.82447 -16.52619 -16.35171 -15.99788 -15.41156 -15.14022 -14.89978 -14.65699 -14.17484 -13.90164 -13.62250 -13.45584 -13.37200 -13.14326 -12.78040 -12.59728 -12.55233 -12.42841 -12.34978 -12.10802 -11.82262 -11.58299 -11.52648 -11.22054 -11.11584 -10.95762 -10.58248 -10.52809 -9.13806 -8.46549 -8.19903 -6.30462 0.79345 1.38244 1.38571 1.49023 1.81221 2.38849 3.11464 3.38235 3.71091 3.85191 3.88068 4.01734 4.12335 4.29632 4.33154 4.39130 4.55934 4.63932 4.64982 4.70788 4.78436 4.83536 4.87772 4.95564 4.98364 5.03582 5.16816 5.22132 5.25111 5.29679 5.34818 5.36265 5.50415 5.55245 5.65329 5.84045 6.20576 6.46798 6.70060 6.84596 7.38167 8.91826 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.005690 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.421550 B = 4919.709019 C = 5711.364857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.095 3.905 3 H 0.022 0.978 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.261 1.261 12 H -0.284 1.284 13 N -0.684 5.684 14 C 0.072 3.928 15 C -0.089 4.089 16 H 0.094 0.906 17 C -0.116 4.116 18 C -0.105 4.105 19 C -0.083 4.083 20 S -0.293 6.293 21 C -0.073 4.073 22 C -0.119 4.119 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.051 0.949 26 H -0.007 1.007 27 H -0.004 1.004 28 H 0.263 0.737 29 H 0.341 0.659 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 4.123 19.786 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.015 4.015 3 H 0.040 0.960 4 C -0.010 4.010 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.185 1.185 12 H -0.210 1.210 13 N -0.318 5.318 14 C -0.058 4.058 15 C -0.108 4.108 16 H 0.112 0.888 17 C -0.154 4.154 18 C -0.144 4.144 19 C -0.231 4.231 20 S -0.066 6.066 21 C -0.221 4.221 22 C -0.158 4.158 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.012 0.988 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.173 2.870 20.007 20.245 hybrid contribution 2.353 1.425 -1.337 3.059 sum 1.181 4.294 18.670 19.194 Atomic orbital electron populations 1.21702 0.94588 1.01348 1.00848 1.21419 0.95093 0.94667 0.90310 0.95993 1.19143 0.94937 0.94680 0.92288 1.21476 0.93161 1.34069 1.08260 0.92567 1.25880 1.03251 0.94799 0.95357 1.70097 1.37545 1.36684 1.12675 0.85556 0.79894 0.77565 0.78701 1.20146 1.18545 1.20962 1.60610 1.33932 1.32792 1.04434 1.22043 0.99846 0.93275 0.90616 1.21200 0.95588 1.00156 0.93887 0.88807 1.20302 1.02741 0.98523 0.93811 1.20582 0.97861 0.98256 0.97709 1.23670 1.02644 0.96150 1.00685 1.86291 1.71016 1.28779 1.20484 1.23895 1.01498 1.00244 0.96503 1.22129 0.97448 0.94652 1.01572 0.93319 0.91982 0.93022 0.98819 0.98547 0.92850 0.83871 0.96673 0.91002 0.91886 0.91519 0.88825 0.91460 0.89408 0.86649 0.89434 0.89085 0.92480 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.41 71.98 0.68 -3.87 16 2 C 0.09 3.98 2.59 44.92 0.12 4.10 16 3 H 0.02 0.94 7.80 -2.39 -0.02 0.92 16 4 C 0.03 1.42 4.57 29.85 0.14 1.56 16 5 C -0.53 -29.41 8.12 25.60 0.21 -29.20 16 6 H 0.06 2.98 7.49 -2.91 -0.02 2.96 16 7 C 0.01 0.30 5.46 84.66 0.46 0.77 16 8 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.68 -26.05 6.31 -491.57 -3.10 -29.15 16 14 C 0.07 2.16 4.66 86.30 0.40 2.56 16 15 C -0.09 -2.23 2.13 -11.29 -0.02 -2.26 16 16 H 0.09 2.67 6.24 -2.39 -0.01 2.66 16 17 C -0.12 -2.18 4.56 28.14 0.13 -2.05 16 18 C -0.10 -1.66 5.49 28.89 0.16 -1.50 16 19 C -0.08 -1.38 5.94 72.75 0.43 -0.95 16 20 S -0.29 -6.90 20.08 -56.49 -1.13 -8.03 16 21 C -0.07 -1.82 6.60 72.53 0.48 -1.34 16 22 C -0.12 -3.00 5.10 30.63 0.16 -2.84 16 23 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.90 7.45 -2.38 -0.02 1.88 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.34 14.25 5.75 -89.70 -0.52 13.73 16 30 H 0.02 0.47 8.04 -2.39 -0.02 0.45 16 31 H 0.07 2.04 7.31 -2.39 -0.02 2.02 16 32 H 0.06 1.11 6.70 -2.39 -0.02 1.09 16 33 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 36 H 0.09 1.35 7.89 -2.49 -0.02 1.33 16 37 H 0.12 1.56 8.14 -2.50 -0.02 1.54 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.06 1.73 6.50 -2.39 -0.02 1.71 16 41 H 0.08 1.69 6.55 -2.39 -0.02 1.68 16 Total: -1.00 -61.63 322.07 1.87 -59.76 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.46 Total: 22.78 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.33 Total: -35.03 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.82 Total: -85.21 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -1.13 Total: -8.03 kcal Total: -61.63 1.87 -59.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690622527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.575 kcal (2) G-P(sol) polarization free energy of solvation -61.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds