Wall clock time and date at job start Mon Mar 30 2020 07:03:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30739 * 1
3 3 Si 1.86801 * 119.99774 * 2 1
4 4 H 1.48498 * 109.47116 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47061 * 299.99896 * 3 2 1
6 6 H 1.48502 * 109.47117 * 59.99944 * 3 2 1
7 7 C 1.40100 * 120.00508 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00119 * 162.31490 * 7 2 1
9 9 C 1.40808 * 119.99551 * 342.59857 * 7 2 1
10 10 C 1.41053 * 120.08597 * 334.75021 * 9 7 2
11 11 C 1.36079 * 119.90514 * 179.69294 * 10 9 7
12 12 C 1.40316 * 120.08903 * 0.58666 * 11 10 9
13 13 C 1.47103 * 119.91248 * 179.69017 * 12 11 10
14 14 C 1.37162 * 125.14796 * 0.02562 * 13 12 11
15 15 C 1.36310 * 114.76937 * 179.97438 * 14 13 12
16 16 C 1.37364 * 114.70880 * 0.02562 * 15 14 13
17 17 C 1.41242 * 125.17741 * 180.02562 * 16 15 14
18 18 O 1.21454 * 119.99763 * 0.02562 * 17 16 15
19 19 S 1.75829 * 125.14890 * 179.72031 * 13 12 11
20 20 C 1.40330 * 120.17784 * 359.71344 * 12 11 10
21 21 C 1.36069 * 120.08691 * 359.97438 * 20 12 11
22 22 H 0.97000 * 120.00734 * 0.02562 * 1 2 3
23 23 H 1.07997 * 120.05060 * 0.02562 * 10 9 7
24 24 H 1.07997 * 119.95407 * 180.32399 * 11 10 9
25 25 H 1.07998 * 122.62236 * 359.97438 * 14 13 12
26 26 H 1.08001 * 122.64851 * 179.97438 * 15 14 13
27 27 H 1.08000 * 119.99791 * 180.02562 * 17 16 15
28 28 H 1.07993 * 119.95520 * 179.97438 * 20 12 11
29 29 H 1.07998 * 120.04316 * 180.02562 * 21 20 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2413 1.6178 0.0000
4 1 3.7013 1.3465 0.0006
5 1 1.8826 2.3964 -1.2125
6 1 1.8825 2.3965 1.2125
7 6 2.0080 -1.2132 0.0005
8 1 3.0497 -1.2354 -0.2836
9 6 1.3523 -2.4046 0.3658
10 6 0.2237 -2.3602 1.2107
11 6 -0.4109 -3.5132 1.5563
12 6 0.0633 -4.7462 1.0833
13 6 -0.6216 -5.9909 1.4649
14 6 -1.7273 -6.0679 2.2728
15 6 -2.1904 -7.3318 2.4881
16 6 -1.4728 -8.3208 1.8606
17 6 -1.7572 -9.7025 1.9318
18 8 -2.7013 -10.0951 2.5873
19 16 -0.1514 -7.6044 0.9481
20 6 1.1896 -4.7952 0.2476
21 6 1.8259 -3.6461 -0.1077
22 1 -0.4851 0.8400 -0.0004
23 1 -0.1394 -1.4119 1.5786
24 1 -1.2782 -3.4797 2.1990
25 1 -2.1947 -5.1954 2.7048
26 1 -3.0529 -7.5392 3.1041
27 1 -1.1352 -10.4098 1.4034
28 1 1.5517 -5.7461 -0.1141
29 1 2.6924 -3.6846 -0.7512
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000016948125.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:03:10
Heat of formation + Delta-G solvation = 3.202673 kcal
Electronic energy + Delta-G solvation = -15234.400542 eV
Core-core repulsion = 12599.427342 eV
Total energy + Delta-G solvation = -2634.973200 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 258.046 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.88168 -38.08882 -36.42520 -34.22441 -31.26768 -29.86709 -28.85351 -26.44043
-24.00730 -22.22427 -21.15426 -20.83005 -18.08810 -17.77639 -17.39511 -15.78094
-15.49884 -15.01077 -14.35983 -14.06623 -13.93673 -13.66785 -13.13451 -12.68363
-12.55410 -12.32950 -11.97806 -11.61686 -11.41462 -11.32759 -11.01998 -10.88061
-10.59110 -10.08406 -9.73744 -9.60172 -9.57146 -8.70912 -8.21432 -7.94270
-7.33614 -7.14262 -4.71263 0.52177 1.97872 2.14758 2.37687 2.68988
2.82310 2.85222 2.88296 3.09635 3.50435 3.57545 4.26297 4.73573
5.32811 5.41505 5.69948 5.80929 5.91661 5.95244 6.05354 6.34364
6.55906 6.63543 6.73314 6.80555 6.83203 6.97637 7.21010 7.47889
7.63145 7.73885 7.76516 7.81938 8.17171 8.37149 8.51253 9.63213
Molecular weight = 258.05amu
Principal moments of inertia in cm(-1)
A = 0.063910 B = 0.004087 C = 0.003881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 438.013274 B = 6848.931317 C = 7212.767616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.758 5.758
2 C 0.069 3.931
3 Si 0.918 3.082
4 H -0.255 1.255
5 H -0.269 1.269
6 H -0.267 1.267
7 C -0.418 4.418
8 H 0.090 0.910
9 C 0.122 3.878
10 C -0.174 4.174
11 C -0.051 4.051
12 C -0.202 4.202
13 C 0.002 3.998
14 C -0.242 4.242
15 C -0.003 4.003
16 C -0.388 4.388
17 C 0.412 3.588
18 O -0.494 6.494
19 S 0.118 5.882
20 C -0.050 4.050
21 C -0.224 4.224
22 H 0.291 0.709
23 H 0.122 0.878
24 H 0.097 0.903
25 H 0.138 0.862
26 H 0.137 0.863
27 H 0.085 0.915
28 H 0.094 0.906
29 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.289 -3.661 0.490 3.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.380 5.380
2 C -0.155 4.155
3 Si 0.741 3.259
4 H -0.178 1.178
5 H -0.194 1.194
6 H -0.191 1.191
7 C -0.446 4.446
8 H 0.108 0.892
9 C 0.118 3.882
10 C -0.193 4.193
11 C -0.072 4.072
12 C -0.208 4.208
13 C -0.117 4.117
14 C -0.267 4.267
15 C -0.035 4.035
16 C -0.505 4.505
17 C 0.277 3.723
18 O -0.374 6.374
19 S 0.386 5.614
20 C -0.070 4.070
21 C -0.244 4.244
22 H 0.102 0.898
23 H 0.140 0.860
24 H 0.115 0.885
25 H 0.156 0.844
26 H 0.155 0.845
27 H 0.101 0.899
28 H 0.112 0.888
29 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 1.685 -4.422 -0.088 4.733
hybrid contribution -0.780 1.427 0.723 1.780
sum 0.905 -2.994 0.634 3.192
Atomic orbital electron populations
1.69775 1.08025 1.30602 1.29590 1.26203 0.94934 1.02343 0.91979
0.86078 0.81059 0.79662 0.79142 1.17849 1.19415 1.19134 1.19972
0.98428 0.91159 1.35002 0.89203 1.17844 0.90680 0.92193 0.87523
1.21000 0.99574 0.97097 1.01675 1.20513 0.97516 0.91673 0.97508
1.17454 1.02034 0.89264 1.12002 1.24060 0.96017 0.95943 0.95699
1.20261 1.00685 0.97929 1.07797 1.20545 0.97158 0.91303 0.94505
1.23836 1.08563 1.00238 1.17836 1.21342 0.84066 0.88329 0.78592
1.90529 1.28574 1.81865 1.36452 1.83696 1.30054 0.98460 1.49226
1.20442 0.94082 0.96963 0.95521 1.20688 1.04097 0.92572 1.07026
0.89777 0.85997 0.88489 0.84384 0.84548 0.89864 0.88813 0.88075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -16.99 10.96 55.56 0.61 -16.38 15
2 C 0.07 1.48 5.14 -17.32 -0.09 1.39 15
3 Si 0.92 15.94 29.60 -169.99 -5.03 10.91 15
4 H -0.26 -4.40 7.11 56.52 0.40 -3.99 15
5 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15
6 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15
7 C -0.42 -9.56 9.02 -37.91 -0.34 -9.90 15
8 H 0.09 1.94 7.91 -52.49 -0.42 1.52 15
9 C 0.12 2.86 5.57 -106.79 -0.59 2.27 15
10 C -0.17 -4.02 8.62 -39.29 -0.34 -4.36 15
11 C -0.05 -1.10 9.47 -39.58 -0.37 -1.47 15
12 C -0.20 -4.22 5.89 -104.73 -0.62 -4.84 15
13 C 0.00 0.04 6.41 -36.38 -0.23 -0.19 15
14 C -0.24 -4.28 9.65 -40.67 -0.39 -4.68 15
15 C 0.00 -0.04 9.82 -40.59 -0.40 -0.44 15
16 C -0.39 -6.39 6.25 -38.76 -0.24 -6.63 15
17 C 0.41 6.27 11.45 31.87 0.37 6.64 15
18 O -0.49 -8.98 17.51 5.41 0.09 -8.89 15
19 S 0.12 1.91 22.13 -107.50 -2.38 -0.47 15
20 C -0.05 -1.04 9.52 -39.57 -0.38 -1.42 15
21 C -0.22 -4.88 9.73 -39.29 -0.38 -5.27 15
22 H 0.29 5.81 8.29 -40.82 -0.34 5.47 15
23 H 0.12 2.87 6.18 -52.49 -0.32 2.55 15
24 H 0.10 1.88 6.73 -52.49 -0.35 1.53 15
25 H 0.14 2.29 6.88 -52.49 -0.36 1.93 15
26 H 0.14 2.13 7.98 -52.49 -0.42 1.71 15
27 H 0.09 0.98 8.06 -52.49 -0.42 0.55 15
28 H 0.09 1.71 7.24 -52.49 -0.38 1.33 15
29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 15
LS Contribution 275.39 15.07 4.15 4.15
Total: -1.00 -24.99 275.39 -8.81 -33.79
By element:
Atomic # 1 Polarization: 8.01 SS G_CDS: -2.23 Total: 5.78 kcal
Atomic # 6 Polarization: -24.88 SS G_CDS: -4.02 Total: -28.90 kcal
Atomic # 7 Polarization: -16.99 SS G_CDS: 0.61 Total: -16.38 kcal
Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal
Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.91 kcal
Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.47 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -24.99 -8.81 -33.79 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000016948125.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.997 kcal
(2) G-P(sol) polarization free energy of solvation -24.989 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds