Wall clock time and date at job start Mon Mar 30 2020 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47061 * 299.99896 * 3 2 1 6 6 H 1.48502 * 109.47117 * 59.99944 * 3 2 1 7 7 C 1.40100 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00119 * 162.31490 * 7 2 1 9 9 C 1.40808 * 119.99551 * 342.59857 * 7 2 1 10 10 C 1.41053 * 120.08597 * 334.75021 * 9 7 2 11 11 C 1.36079 * 119.90514 * 179.69294 * 10 9 7 12 12 C 1.40316 * 120.08903 * 0.58666 * 11 10 9 13 13 C 1.47103 * 119.91248 * 179.69017 * 12 11 10 14 14 C 1.37162 * 125.14796 * 0.02562 * 13 12 11 15 15 C 1.36310 * 114.76937 * 179.97438 * 14 13 12 16 16 C 1.37364 * 114.70880 * 0.02562 * 15 14 13 17 17 C 1.41242 * 125.17741 * 180.02562 * 16 15 14 18 18 O 1.21454 * 119.99763 * 0.02562 * 17 16 15 19 19 S 1.75829 * 125.14890 * 179.72031 * 13 12 11 20 20 C 1.40330 * 120.17784 * 359.71344 * 12 11 10 21 21 C 1.36069 * 120.08691 * 359.97438 * 20 12 11 22 22 H 0.97000 * 120.00734 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.05060 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.95407 * 180.32399 * 11 10 9 25 25 H 1.07998 * 122.62236 * 359.97438 * 14 13 12 26 26 H 1.08001 * 122.64851 * 179.97438 * 15 14 13 27 27 H 1.08000 * 119.99791 * 180.02562 * 17 16 15 28 28 H 1.07993 * 119.95520 * 179.97438 * 20 12 11 29 29 H 1.07998 * 120.04316 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0080 -1.2132 0.0005 8 1 3.0497 -1.2354 -0.2836 9 6 1.3523 -2.4046 0.3658 10 6 0.2237 -2.3602 1.2107 11 6 -0.4109 -3.5132 1.5563 12 6 0.0633 -4.7462 1.0833 13 6 -0.6216 -5.9909 1.4649 14 6 -1.7273 -6.0679 2.2728 15 6 -2.1904 -7.3318 2.4881 16 6 -1.4728 -8.3208 1.8606 17 6 -1.7572 -9.7025 1.9318 18 8 -2.7013 -10.0951 2.5873 19 16 -0.1514 -7.6044 0.9481 20 6 1.1896 -4.7952 0.2476 21 6 1.8259 -3.6461 -0.1077 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1394 -1.4119 1.5786 24 1 -1.2782 -3.4797 2.1990 25 1 -2.1947 -5.1954 2.7048 26 1 -3.0529 -7.5392 3.1041 27 1 -1.1352 -10.4098 1.4034 28 1 1.5517 -5.7461 -0.1141 29 1 2.6924 -3.6846 -0.7512 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016948125.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:10 Heat of formation + Delta-G solvation = 3.202673 kcal Electronic energy + Delta-G solvation = -15234.400542 eV Core-core repulsion = 12599.427342 eV Total energy + Delta-G solvation = -2634.973200 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88168 -38.08882 -36.42520 -34.22441 -31.26768 -29.86709 -28.85351 -26.44043 -24.00730 -22.22427 -21.15426 -20.83005 -18.08810 -17.77639 -17.39511 -15.78094 -15.49884 -15.01077 -14.35983 -14.06623 -13.93673 -13.66785 -13.13451 -12.68363 -12.55410 -12.32950 -11.97806 -11.61686 -11.41462 -11.32759 -11.01998 -10.88061 -10.59110 -10.08406 -9.73744 -9.60172 -9.57146 -8.70912 -8.21432 -7.94270 -7.33614 -7.14262 -4.71263 0.52177 1.97872 2.14758 2.37687 2.68988 2.82310 2.85222 2.88296 3.09635 3.50435 3.57545 4.26297 4.73573 5.32811 5.41505 5.69948 5.80929 5.91661 5.95244 6.05354 6.34364 6.55906 6.63543 6.73314 6.80555 6.83203 6.97637 7.21010 7.47889 7.63145 7.73885 7.76516 7.81938 8.17171 8.37149 8.51253 9.63213 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.063910 B = 0.004087 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.013274 B = 6848.931317 C = 7212.767616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.418 4.418 8 H 0.090 0.910 9 C 0.122 3.878 10 C -0.174 4.174 11 C -0.051 4.051 12 C -0.202 4.202 13 C 0.002 3.998 14 C -0.242 4.242 15 C -0.003 4.003 16 C -0.388 4.388 17 C 0.412 3.588 18 O -0.494 6.494 19 S 0.118 5.882 20 C -0.050 4.050 21 C -0.224 4.224 22 H 0.291 0.709 23 H 0.122 0.878 24 H 0.097 0.903 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -3.661 0.490 3.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.155 4.155 3 Si 0.741 3.259 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.446 4.446 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.193 4.193 11 C -0.072 4.072 12 C -0.208 4.208 13 C -0.117 4.117 14 C -0.267 4.267 15 C -0.035 4.035 16 C -0.505 4.505 17 C 0.277 3.723 18 O -0.374 6.374 19 S 0.386 5.614 20 C -0.070 4.070 21 C -0.244 4.244 22 H 0.102 0.898 23 H 0.140 0.860 24 H 0.115 0.885 25 H 0.156 0.844 26 H 0.155 0.845 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.685 -4.422 -0.088 4.733 hybrid contribution -0.780 1.427 0.723 1.780 sum 0.905 -2.994 0.634 3.192 Atomic orbital electron populations 1.69775 1.08025 1.30602 1.29590 1.26203 0.94934 1.02343 0.91979 0.86078 0.81059 0.79662 0.79142 1.17849 1.19415 1.19134 1.19972 0.98428 0.91159 1.35002 0.89203 1.17844 0.90680 0.92193 0.87523 1.21000 0.99574 0.97097 1.01675 1.20513 0.97516 0.91673 0.97508 1.17454 1.02034 0.89264 1.12002 1.24060 0.96017 0.95943 0.95699 1.20261 1.00685 0.97929 1.07797 1.20545 0.97158 0.91303 0.94505 1.23836 1.08563 1.00238 1.17836 1.21342 0.84066 0.88329 0.78592 1.90529 1.28574 1.81865 1.36452 1.83696 1.30054 0.98460 1.49226 1.20442 0.94082 0.96963 0.95521 1.20688 1.04097 0.92572 1.07026 0.89777 0.85997 0.88489 0.84384 0.84548 0.89864 0.88813 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.99 10.96 55.56 0.61 -16.38 15 2 C 0.07 1.48 5.14 -17.32 -0.09 1.39 15 3 Si 0.92 15.94 29.60 -169.99 -5.03 10.91 15 4 H -0.26 -4.40 7.11 56.52 0.40 -3.99 15 5 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 6 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15 7 C -0.42 -9.56 9.02 -37.91 -0.34 -9.90 15 8 H 0.09 1.94 7.91 -52.49 -0.42 1.52 15 9 C 0.12 2.86 5.57 -106.79 -0.59 2.27 15 10 C -0.17 -4.02 8.62 -39.29 -0.34 -4.36 15 11 C -0.05 -1.10 9.47 -39.58 -0.37 -1.47 15 12 C -0.20 -4.22 5.89 -104.73 -0.62 -4.84 15 13 C 0.00 0.04 6.41 -36.38 -0.23 -0.19 15 14 C -0.24 -4.28 9.65 -40.67 -0.39 -4.68 15 15 C 0.00 -0.04 9.82 -40.59 -0.40 -0.44 15 16 C -0.39 -6.39 6.25 -38.76 -0.24 -6.63 15 17 C 0.41 6.27 11.45 31.87 0.37 6.64 15 18 O -0.49 -8.98 17.51 5.41 0.09 -8.89 15 19 S 0.12 1.91 22.13 -107.50 -2.38 -0.47 15 20 C -0.05 -1.04 9.52 -39.57 -0.38 -1.42 15 21 C -0.22 -4.88 9.73 -39.29 -0.38 -5.27 15 22 H 0.29 5.81 8.29 -40.82 -0.34 5.47 15 23 H 0.12 2.87 6.18 -52.49 -0.32 2.55 15 24 H 0.10 1.88 6.73 -52.49 -0.35 1.53 15 25 H 0.14 2.29 6.88 -52.49 -0.36 1.93 15 26 H 0.14 2.13 7.98 -52.49 -0.42 1.71 15 27 H 0.09 0.98 8.06 -52.49 -0.42 0.55 15 28 H 0.09 1.71 7.24 -52.49 -0.38 1.33 15 29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 275.39 15.07 4.15 4.15 Total: -1.00 -24.99 275.39 -8.81 -33.79 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.23 Total: 5.78 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -4.02 Total: -28.90 kcal Atomic # 7 Polarization: -16.99 SS G_CDS: 0.61 Total: -16.38 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.91 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -24.99 -8.81 -33.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016948125.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.997 kcal (2) G-P(sol) polarization free energy of solvation -24.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds