Wall clock time and date at job start Mon Mar 30 2020 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48498 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47061 * 299.99896 * 3 2 1 6 6 H 1.48502 * 109.47117 * 59.99944 * 3 2 1 7 7 C 1.40100 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00119 * 162.31490 * 7 2 1 9 9 C 1.40808 * 119.99551 * 342.59857 * 7 2 1 10 10 C 1.41053 * 120.08597 * 334.75021 * 9 7 2 11 11 C 1.36079 * 119.90514 * 179.69294 * 10 9 7 12 12 C 1.40316 * 120.08903 * 0.58666 * 11 10 9 13 13 C 1.47103 * 119.91248 * 179.69017 * 12 11 10 14 14 C 1.37162 * 125.14796 * 0.02562 * 13 12 11 15 15 C 1.36310 * 114.76937 * 179.97438 * 14 13 12 16 16 C 1.37364 * 114.70880 * 0.02562 * 15 14 13 17 17 C 1.41242 * 125.17741 * 180.02562 * 16 15 14 18 18 O 1.21454 * 119.99763 * 0.02562 * 17 16 15 19 19 S 1.75829 * 125.14890 * 179.72031 * 13 12 11 20 20 C 1.40330 * 120.17784 * 359.71344 * 12 11 10 21 21 C 1.36069 * 120.08691 * 359.97438 * 20 12 11 22 22 H 0.97000 * 120.00734 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.05060 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.95407 * 180.32399 * 11 10 9 25 25 H 1.07998 * 122.62236 * 359.97438 * 14 13 12 26 26 H 1.08001 * 122.64851 * 179.97438 * 15 14 13 27 27 H 1.08000 * 119.99791 * 180.02562 * 17 16 15 28 28 H 1.07993 * 119.95520 * 179.97438 * 20 12 11 29 29 H 1.07998 * 120.04316 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0080 -1.2132 0.0005 8 1 3.0497 -1.2354 -0.2836 9 6 1.3523 -2.4046 0.3658 10 6 0.2237 -2.3602 1.2107 11 6 -0.4109 -3.5132 1.5563 12 6 0.0633 -4.7462 1.0833 13 6 -0.6216 -5.9909 1.4649 14 6 -1.7273 -6.0679 2.2728 15 6 -2.1904 -7.3318 2.4881 16 6 -1.4728 -8.3208 1.8606 17 6 -1.7572 -9.7025 1.9318 18 8 -2.7013 -10.0951 2.5873 19 16 -0.1514 -7.6044 0.9481 20 6 1.1896 -4.7952 0.2476 21 6 1.8259 -3.6461 -0.1077 22 1 -0.4851 0.8400 -0.0004 23 1 -0.1394 -1.4119 1.5786 24 1 -1.2782 -3.4797 2.1990 25 1 -2.1947 -5.1954 2.7048 26 1 -3.0529 -7.5392 3.1041 27 1 -1.1352 -10.4098 1.4034 28 1 1.5517 -5.7461 -0.1141 29 1 2.6924 -3.6846 -0.7512 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016948125.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:10 Heat of formation + Delta-G solvation = -7.458886 kcal Electronic energy + Delta-G solvation = -15234.862862 eV Core-core repulsion = 12599.427342 eV Total energy + Delta-G solvation = -2635.435520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24518 -39.67163 -37.86480 -35.79249 -32.81374 -31.52244 -30.33755 -27.94721 -25.50310 -23.67535 -22.74969 -22.33925 -19.54606 -19.39149 -18.73383 -17.31143 -16.91524 -16.37993 -15.85571 -15.42475 -15.41595 -15.25361 -14.60982 -14.20255 -14.05557 -13.89199 -13.49054 -13.03342 -12.96747 -12.75933 -12.56017 -12.34356 -11.98332 -11.63209 -11.30602 -11.18368 -10.88772 -10.23843 -9.61675 -9.51480 -8.90569 -8.70971 -6.39590 -0.86191 0.59360 0.68309 0.98874 1.13483 1.31560 1.39781 1.54759 1.66018 2.13045 2.15129 2.66718 3.58958 3.64820 3.96297 4.27597 4.34769 4.42658 4.52135 4.60335 4.89643 4.95674 5.06497 5.19101 5.28743 5.34109 5.43311 5.58034 5.84031 5.97536 6.07365 6.17935 6.52016 6.52204 6.73170 6.85932 8.11545 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.063910 B = 0.004087 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.013274 B = 6848.931317 C = 7212.767616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.033 3.967 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.090 0.910 9 C 0.094 3.906 10 C -0.196 4.196 11 C -0.061 4.061 12 C -0.202 4.202 13 C -0.043 4.043 14 C -0.225 4.225 15 C -0.022 4.022 16 C -0.379 4.379 17 C 0.418 3.582 18 O -0.518 6.518 19 S 0.184 5.816 20 C -0.056 4.056 21 C -0.240 4.240 22 H 0.297 0.703 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -6.098 0.594 6.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.108 0.892 9 C 0.090 3.910 10 C -0.215 4.215 11 C -0.081 4.081 12 C -0.206 4.206 13 C -0.163 4.163 14 C -0.251 4.251 15 C -0.054 4.054 16 C -0.496 4.496 17 C 0.283 3.717 18 O -0.399 6.399 19 S 0.453 5.547 20 C -0.076 4.076 21 C -0.260 4.260 22 H 0.108 0.892 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.161 0.839 26 H 0.166 0.834 27 H 0.152 0.848 28 H 0.136 0.864 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.640 -6.856 -0.004 7.049 hybrid contribution -0.971 1.634 0.804 2.064 sum 0.669 -5.222 0.800 5.325 Atomic orbital electron populations 1.69814 1.09339 1.31650 1.31311 1.26975 0.95532 1.05096 0.90963 0.85051 0.79596 0.75430 0.79151 1.17661 1.18859 1.18774 1.20131 0.98765 0.92123 1.37800 0.89179 1.18154 0.91316 0.93303 0.88215 1.20975 1.00568 0.97191 1.02789 1.20707 0.97896 0.91752 0.97766 1.17644 1.01866 0.89927 1.11184 1.24077 0.97354 0.96967 0.97886 1.20469 0.99713 0.98732 1.06207 1.20712 0.98143 0.91026 0.95565 1.24403 1.07872 1.01282 1.16053 1.22021 0.83696 0.88193 0.77751 1.90544 1.29840 1.82087 1.37385 1.83464 1.28361 0.95720 1.47164 1.20670 0.93928 0.97550 0.95417 1.20879 1.04840 0.92655 1.07594 0.89195 0.87422 0.87128 0.83883 0.83364 0.84801 0.86406 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.63 10.96 21.85 0.24 -37.39 15 2 C 0.03 1.51 5.14 85.31 0.44 1.94 15 3 Si 0.99 33.71 29.60 68.60 2.03 35.74 15 4 H -0.25 -8.43 7.11 99.48 0.71 -7.72 15 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 6 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 7 C -0.46 -22.21 9.02 23.35 0.21 -22.00 15 8 H 0.09 4.11 7.91 -2.91 -0.02 4.09 15 9 C 0.09 4.63 5.57 -21.27 -0.12 4.51 15 10 C -0.20 -9.53 8.62 22.46 0.19 -9.33 15 11 C -0.06 -2.66 9.47 22.27 0.21 -2.45 15 12 C -0.20 -8.33 5.89 -19.94 -0.12 -8.45 15 13 C -0.04 -1.54 6.41 24.34 0.16 -1.39 15 14 C -0.23 -7.47 9.65 21.57 0.21 -7.26 15 15 C -0.02 -0.66 9.82 21.61 0.21 -0.45 15 16 C -0.38 -10.85 6.25 22.80 0.14 -10.71 15 17 C 0.42 10.66 11.45 68.56 0.79 11.45 15 18 O -0.52 -16.78 17.51 -3.57 -0.06 -16.85 15 19 S 0.18 5.22 22.13 -56.49 -1.25 3.97 15 20 C -0.06 -2.30 9.52 22.27 0.21 -2.08 15 21 C -0.24 -10.74 9.73 22.46 0.22 -10.52 15 22 H 0.30 12.46 8.29 -92.71 -0.77 11.69 15 23 H 0.11 5.43 6.18 -2.91 -0.02 5.41 15 24 H 0.11 4.37 6.73 -2.91 -0.02 4.35 15 25 H 0.14 4.52 6.88 -2.91 -0.02 4.50 15 26 H 0.15 4.18 7.98 -2.91 -0.02 4.16 15 27 H 0.14 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.12 4.08 7.24 -2.91 -0.02 4.06 15 29 H 0.11 4.55 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -54.85 275.39 4.89 -49.96 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 1.18 Total: 21.31 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 2.75 Total: -56.74 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.24 Total: -37.39 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.06 Total: -16.85 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.25 Total: 3.97 kcal Total: -54.85 4.89 -49.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016948125.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.506 kcal (2) G-P(sol) polarization free energy of solvation -54.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds