Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48499 * 109.46948 * 270.00168 * 3 2 1 5 5 H 1.48496 * 109.47202 * 30.00093 * 3 2 1 6 6 H 1.48499 * 109.47300 * 150.00180 * 3 2 1 7 7 C 1.37884 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.46895 * 180.02562 * 9 7 2 11 11 O 1.21270 * 120.00241 * 359.97438 * 10 9 7 12 12 C 1.46980 * 119.99657 * 180.02562 * 10 9 7 13 13 C 1.40035 * 120.19252 * 179.97438 * 12 10 9 14 14 Cl 1.73608 * 120.10187 * 359.70083 * 13 12 10 15 15 C 1.38029 * 119.79962 * 179.97438 * 13 12 10 16 16 C 1.38373 * 120.19430 * 359.97438 * 15 13 12 17 17 C 1.38371 * 120.40059 * 0.02562 * 16 15 13 18 18 C 1.38024 * 120.20035 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.10163 * 180.02562 * 18 17 16 20 20 H 0.97006 * 119.99754 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47488 * 60.00340 * 9 7 2 22 22 H 1.09006 * 109.47404 * 300.00041 * 9 7 2 23 23 H 1.07999 * 119.90322 * 180.02562 * 15 13 12 24 24 H 1.08006 * 119.79674 * 180.02562 * 16 15 13 25 25 H 1.08005 * 119.89571 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 8 3.2258 -3.5367 0.0011 12 6 5.4589 -2.8835 0.0001 13 6 5.9301 -4.2021 0.0008 14 17 4.8089 -5.5275 0.0094 15 6 7.2889 -4.4450 0.0003 16 6 8.1844 -3.3901 -0.0013 17 6 7.7277 -2.0839 -0.0020 18 6 6.3725 -1.8222 -0.0015 19 17 5.8024 -0.1826 -0.0030 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8745 -0.6808 -0.8905 23 1 7.6542 -5.4613 0.0004 24 1 9.2463 -3.5875 -0.0021 25 1 8.4339 -1.2667 -0.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426767.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = -4.289221 kcal Electronic energy + Delta-G solvation = -14573.915916 eV Core-core repulsion = 11798.308192 eV Total energy + Delta-G solvation = -2775.607723 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80720 -37.75987 -36.70694 -36.12961 -32.83922 -31.51255 -30.74249 -29.52954 -24.72293 -22.95608 -22.13508 -19.53601 -17.43897 -16.85566 -15.90094 -15.63561 -14.73962 -14.46533 -14.42655 -14.20318 -13.51189 -13.09224 -12.50236 -12.41186 -12.26845 -11.89720 -11.47229 -11.15310 -10.99333 -10.83869 -10.57595 -10.37812 -9.77250 -8.96364 -8.78516 -8.73146 -8.57365 -8.51393 -6.00738 -3.99214 0.59436 0.90247 1.93842 2.33694 2.84522 3.28589 3.34570 3.36842 3.66877 4.41566 4.44193 4.63031 4.77363 4.98548 5.24546 5.31269 5.34738 5.76656 5.86471 5.99476 6.34629 6.46953 6.75637 6.99182 7.66089 8.36777 8.59852 9.15535 9.58772 11.12498 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.008709 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.826220 B = 3214.461880 C = 4316.140872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.866 3.134 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.089 0.911 9 C -0.059 4.059 10 C 0.387 3.613 11 O -0.419 6.419 12 C -0.143 4.143 13 C 0.014 3.986 14 Cl -0.027 7.027 15 C -0.125 4.125 16 C -0.080 4.080 17 C -0.124 4.124 18 C 0.011 3.989 19 Cl -0.029 7.029 20 H 0.263 0.737 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.140 0.860 24 H 0.141 0.859 25 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.309 -4.898 0.041 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.693 3.307 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.555 4.555 8 H 0.107 0.893 9 C -0.096 4.096 10 C 0.262 3.738 11 O -0.292 6.292 12 C -0.146 4.146 13 C -0.013 4.013 14 Cl 0.003 6.997 15 C -0.144 4.144 16 C -0.098 4.098 17 C -0.143 4.143 18 C -0.017 4.017 19 Cl 0.001 6.999 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.158 0.842 24 H 0.159 0.841 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.546 -5.245 0.044 19.273 hybrid contribution 0.384 1.071 -0.026 1.138 sum 18.930 -4.174 0.019 19.385 Atomic orbital electron populations 1.69900 1.06183 1.26716 1.50957 1.24923 0.94667 0.98615 0.94751 0.86998 0.80761 0.84303 0.78672 1.20131 1.21204 1.18438 1.21123 0.88273 0.95529 1.50597 0.89296 1.20584 0.99295 0.90284 0.99454 1.22842 0.84739 0.93870 0.72380 1.90504 1.57585 1.47283 1.33804 1.20881 0.98542 0.90859 1.04324 1.21168 0.91221 0.89050 0.99904 1.98424 1.61396 1.43956 1.95937 1.21125 0.90665 1.00678 1.01967 1.21193 1.00039 0.91311 0.97263 1.21128 0.93374 0.97991 1.01784 1.21179 0.93198 0.86977 1.00341 1.98458 1.88025 1.17669 1.95761 0.92698 0.91985 0.92555 0.84176 0.84079 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 15 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.26 -5.79 6.16 56.52 0.35 -5.44 15 7 C -0.52 -15.20 9.48 -34.44 -0.33 -15.52 15 8 H 0.09 2.93 7.00 -52.49 -0.37 2.56 15 9 C -0.06 -1.42 2.34 -29.03 -0.07 -1.49 15 10 C 0.39 8.62 7.10 -30.77 -0.22 8.40 15 11 O -0.42 -10.38 13.08 5.57 0.07 -10.31 15 12 C -0.14 -2.53 5.87 -105.01 -0.62 -3.15 15 13 C 0.01 0.22 6.36 -38.98 -0.25 -0.03 15 14 Cl -0.03 -0.44 26.03 -51.86 -1.35 -1.79 15 15 C -0.13 -1.41 9.81 -39.61 -0.39 -1.80 15 16 C -0.08 -0.75 10.03 -39.48 -0.40 -1.14 15 17 C -0.12 -1.37 9.81 -39.61 -0.39 -1.76 15 18 C 0.01 0.16 6.36 -38.99 -0.25 -0.09 15 19 Cl -0.03 -0.47 22.62 -51.86 -1.17 -1.65 15 20 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 21 H 0.06 1.44 5.49 -51.93 -0.29 1.16 15 22 H 0.06 1.30 5.86 -51.93 -0.30 1.00 15 23 H 0.14 1.19 8.06 -52.49 -0.42 0.77 15 24 H 0.14 0.80 8.06 -52.48 -0.42 0.38 15 25 H 0.14 1.18 8.06 -52.48 -0.42 0.75 15 LS Contribution 247.01 15.07 3.72 3.72 Total: -1.00 -32.79 247.01 -7.03 -39.83 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: -1.41 Total: -4.30 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.00 Total: -14.57 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -2.52 Total: -3.43 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.79 -7.03 -39.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426767.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.539 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds