Wall clock time and date at job start Mon Mar 30 2020 06:36:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86802 * 120.00138 * 2 1
4 4 H 1.48499 * 109.46948 * 270.00168 * 3 2 1
5 5 H 1.48496 * 109.47202 * 30.00093 * 3 2 1
6 6 H 1.48499 * 109.47300 * 150.00180 * 3 2 1
7 7 C 1.37884 * 119.99991 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00007 * 0.02562 * 7 2 1
9 9 C 1.50697 * 119.99868 * 179.97438 * 7 2 1
10 10 C 1.50704 * 109.46895 * 180.02562 * 9 7 2
11 11 O 1.21270 * 120.00241 * 359.97438 * 10 9 7
12 12 C 1.46980 * 119.99657 * 180.02562 * 10 9 7
13 13 C 1.40035 * 120.19252 * 179.97438 * 12 10 9
14 14 Cl 1.73608 * 120.10187 * 359.70083 * 13 12 10
15 15 C 1.38029 * 119.79962 * 179.97438 * 13 12 10
16 16 C 1.38373 * 120.19430 * 359.97438 * 15 13 12
17 17 C 1.38371 * 120.40059 * 0.02562 * 16 15 13
18 18 C 1.38024 * 120.20035 * 359.97438 * 17 16 15
19 19 Cl 1.73595 * 120.10163 * 180.02562 * 18 17 16
20 20 H 0.97006 * 119.99754 * 359.97438 * 1 2 3
21 21 H 1.09001 * 109.47488 * 60.00340 * 9 7 2
22 22 H 1.09006 * 109.47404 * 300.00041 * 9 7 2
23 23 H 1.07999 * 119.90322 * 180.02562 * 15 13 12
24 24 H 1.08006 * 119.79674 * 180.02562 * 16 15 13
25 25 H 1.08005 * 119.89571 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4467 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5115 -1.1941 0.0000
10 6 4.0138 -2.6149 0.0001
11 8 3.2258 -3.5367 0.0011
12 6 5.4589 -2.8835 0.0001
13 6 5.9301 -4.2021 0.0008
14 17 4.8089 -5.5275 0.0094
15 6 7.2889 -4.4450 0.0003
16 6 8.1844 -3.3901 -0.0013
17 6 7.7277 -2.0839 -0.0020
18 6 6.3725 -1.8222 -0.0015
19 17 5.8024 -0.1826 -0.0030
20 1 -0.4850 0.8401 0.0004
21 1 3.8752 -0.6797 0.8895
22 1 3.8745 -0.6808 -0.8905
23 1 7.6542 -5.4613 0.0004
24 1 9.2463 -3.5875 -0.0021
25 1 8.4339 -1.2667 -0.0029
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000033426767.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:36:40
Heat of formation + Delta-G solvation = -4.289221 kcal
Electronic energy + Delta-G solvation = -14573.915916 eV
Core-core repulsion = 11798.308192 eV
Total energy + Delta-G solvation = -2775.607723 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 257.995 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.80720 -37.75987 -36.70694 -36.12961 -32.83922 -31.51255 -30.74249 -29.52954
-24.72293 -22.95608 -22.13508 -19.53601 -17.43897 -16.85566 -15.90094 -15.63561
-14.73962 -14.46533 -14.42655 -14.20318 -13.51189 -13.09224 -12.50236 -12.41186
-12.26845 -11.89720 -11.47229 -11.15310 -10.99333 -10.83869 -10.57595 -10.37812
-9.77250 -8.96364 -8.78516 -8.73146 -8.57365 -8.51393 -6.00738 -3.99214
0.59436 0.90247 1.93842 2.33694 2.84522 3.28589 3.34570 3.36842
3.66877 4.41566 4.44193 4.63031 4.77363 4.98548 5.24546 5.31269
5.34738 5.76656 5.86471 5.99476 6.34629 6.46953 6.75637 6.99182
7.66089 8.36777 8.59852 9.15535 9.58772 11.12498
Molecular weight = 258.00amu
Principal moments of inertia in cm(-1)
A = 0.025065 B = 0.008709 C = 0.006486
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1116.826220 B = 3214.461880 C = 4316.140872
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.072 3.928
3 Si 0.866 3.134
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.260 1.260
7 C -0.517 4.517
8 H 0.089 0.911
9 C -0.059 4.059
10 C 0.387 3.613
11 O -0.419 6.419
12 C -0.143 4.143
13 C 0.014 3.986
14 Cl -0.027 7.027
15 C -0.125 4.125
16 C -0.080 4.080
17 C -0.124 4.124
18 C 0.011 3.989
19 Cl -0.029 7.029
20 H 0.263 0.737
21 H 0.063 0.937
22 H 0.057 0.943
23 H 0.140 0.860
24 H 0.141 0.859
25 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.309 -4.898 0.041 19.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.130 4.130
3 Si 0.693 3.307
4 H -0.201 1.201
5 H -0.212 1.212
6 H -0.184 1.184
7 C -0.555 4.555
8 H 0.107 0.893
9 C -0.096 4.096
10 C 0.262 3.738
11 O -0.292 6.292
12 C -0.146 4.146
13 C -0.013 4.013
14 Cl 0.003 6.997
15 C -0.144 4.144
16 C -0.098 4.098
17 C -0.143 4.143
18 C -0.017 4.017
19 Cl 0.001 6.999
20 H 0.073 0.927
21 H 0.080 0.920
22 H 0.074 0.926
23 H 0.158 0.842
24 H 0.159 0.841
25 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 18.546 -5.245 0.044 19.273
hybrid contribution 0.384 1.071 -0.026 1.138
sum 18.930 -4.174 0.019 19.385
Atomic orbital electron populations
1.69900 1.06183 1.26716 1.50957 1.24923 0.94667 0.98615 0.94751
0.86998 0.80761 0.84303 0.78672 1.20131 1.21204 1.18438 1.21123
0.88273 0.95529 1.50597 0.89296 1.20584 0.99295 0.90284 0.99454
1.22842 0.84739 0.93870 0.72380 1.90504 1.57585 1.47283 1.33804
1.20881 0.98542 0.90859 1.04324 1.21168 0.91221 0.89050 0.99904
1.98424 1.61396 1.43956 1.95937 1.21125 0.90665 1.00678 1.01967
1.21193 1.00039 0.91311 0.97263 1.21128 0.93374 0.97991 1.01784
1.21179 0.93198 0.86977 1.00341 1.98458 1.88025 1.17669 1.95761
0.92698 0.91985 0.92555 0.84176 0.84079 0.84057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 15
2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15
3 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 15
4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15
6 H -0.26 -5.79 6.16 56.52 0.35 -5.44 15
7 C -0.52 -15.20 9.48 -34.44 -0.33 -15.52 15
8 H 0.09 2.93 7.00 -52.49 -0.37 2.56 15
9 C -0.06 -1.42 2.34 -29.03 -0.07 -1.49 15
10 C 0.39 8.62 7.10 -30.77 -0.22 8.40 15
11 O -0.42 -10.38 13.08 5.57 0.07 -10.31 15
12 C -0.14 -2.53 5.87 -105.01 -0.62 -3.15 15
13 C 0.01 0.22 6.36 -38.98 -0.25 -0.03 15
14 Cl -0.03 -0.44 26.03 -51.86 -1.35 -1.79 15
15 C -0.13 -1.41 9.81 -39.61 -0.39 -1.80 15
16 C -0.08 -0.75 10.03 -39.48 -0.40 -1.14 15
17 C -0.12 -1.37 9.81 -39.61 -0.39 -1.76 15
18 C 0.01 0.16 6.36 -38.99 -0.25 -0.09 15
19 Cl -0.03 -0.47 22.62 -51.86 -1.17 -1.65 15
20 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15
21 H 0.06 1.44 5.49 -51.93 -0.29 1.16 15
22 H 0.06 1.30 5.86 -51.93 -0.30 1.00 15
23 H 0.14 1.19 8.06 -52.49 -0.42 0.77 15
24 H 0.14 0.80 8.06 -52.48 -0.42 0.38 15
25 H 0.14 1.18 8.06 -52.48 -0.42 0.75 15
LS Contribution 247.01 15.07 3.72 3.72
Total: -1.00 -32.79 247.01 -7.03 -39.83
By element:
Atomic # 1 Polarization: -2.89 SS G_CDS: -1.41 Total: -4.30 kcal
Atomic # 6 Polarization: -11.57 SS G_CDS: -3.00 Total: -14.57 kcal
Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.42 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal
Atomic # 17 Polarization: -0.91 SS G_CDS: -2.52 Total: -3.43 kcal
Total LS contribution 3.72 Total: 3.72 kcal
Total: -32.79 -7.03 -39.83 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000033426767.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.539 kcal
(2) G-P(sol) polarization free energy of solvation -32.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.289 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds