Wall clock time and date at job start Mon Mar 30 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48499 * 109.46948 * 270.00168 * 3 2 1 5 5 H 1.48496 * 109.47202 * 30.00093 * 3 2 1 6 6 H 1.48499 * 109.47300 * 150.00180 * 3 2 1 7 7 C 1.37884 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00007 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99868 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.46895 * 180.02562 * 9 7 2 11 11 O 1.21270 * 120.00241 * 359.97438 * 10 9 7 12 12 C 1.46980 * 119.99657 * 180.02562 * 10 9 7 13 13 C 1.40035 * 120.19252 * 179.97438 * 12 10 9 14 14 Cl 1.73608 * 120.10187 * 359.70083 * 13 12 10 15 15 C 1.38029 * 119.79962 * 179.97438 * 13 12 10 16 16 C 1.38373 * 120.19430 * 359.97438 * 15 13 12 17 17 C 1.38371 * 120.40059 * 0.02562 * 16 15 13 18 18 C 1.38024 * 120.20035 * 359.97438 * 17 16 15 19 19 Cl 1.73595 * 120.10163 * 180.02562 * 18 17 16 20 20 H 0.97006 * 119.99754 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47488 * 60.00340 * 9 7 2 22 22 H 1.09006 * 109.47404 * 300.00041 * 9 7 2 23 23 H 1.07999 * 119.90322 * 180.02562 * 15 13 12 24 24 H 1.08006 * 119.79674 * 180.02562 * 16 15 13 25 25 H 1.08005 * 119.89571 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 8 3.2258 -3.5367 0.0011 12 6 5.4589 -2.8835 0.0001 13 6 5.9301 -4.2021 0.0008 14 17 4.8089 -5.5275 0.0094 15 6 7.2889 -4.4450 0.0003 16 6 8.1844 -3.3901 -0.0013 17 6 7.7277 -2.0839 -0.0020 18 6 6.3725 -1.8222 -0.0015 19 17 5.8024 -0.1826 -0.0030 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8745 -0.6808 -0.8905 23 1 7.6542 -5.4613 0.0004 24 1 9.2463 -3.5875 -0.0021 25 1 8.4339 -1.2667 -0.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426767.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:40 Heat of formation + Delta-G solvation = -25.734828 kcal Electronic energy + Delta-G solvation = -14574.845867 eV Core-core repulsion = 11798.308192 eV Total energy + Delta-G solvation = -2776.537675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08937 -39.24135 -37.88805 -37.28557 -35.03566 -32.88564 -31.74932 -31.35293 -26.41290 -24.22398 -23.45269 -21.05096 -19.26282 -18.25438 -17.24207 -16.94137 -16.29406 -16.22235 -15.66335 -15.44687 -15.15608 -14.49581 -14.43659 -13.86288 -13.29247 -13.15623 -13.11245 -12.63438 -12.52088 -12.28327 -12.10877 -11.97805 -11.81171 -10.79113 -10.59161 -10.23190 -10.09000 -9.79828 -8.28683 -6.34910 -0.56085 -0.07138 0.80386 1.19337 1.32898 1.38311 1.45717 1.49470 2.34857 2.46959 3.05258 3.06785 3.74050 3.78588 4.13150 4.25514 4.32469 4.61376 4.76988 4.94352 5.06713 5.07586 5.11758 5.51474 5.55973 6.24993 6.74741 6.76840 7.28104 8.88883 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.008709 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.826220 B = 3214.461880 C = 4316.140872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.008 3.992 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.227 1.227 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.053 4.053 10 C 0.381 3.619 11 O -0.464 6.464 12 C -0.179 4.179 13 C 0.000 4.000 14 Cl -0.052 7.052 15 C -0.115 4.115 16 C -0.046 4.046 17 C -0.110 4.110 18 C 0.004 3.996 19 Cl -0.048 7.048 20 H 0.267 0.733 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.173 0.827 24 H 0.198 0.802 25 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.401 -3.938 0.061 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.188 4.188 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.150 1.150 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.090 4.090 10 C 0.260 3.740 11 O -0.340 6.340 12 C -0.182 4.182 13 C -0.028 4.028 14 Cl -0.022 7.022 15 C -0.133 4.133 16 C -0.064 4.064 17 C -0.129 4.129 18 C -0.023 4.023 19 Cl -0.019 7.019 20 H 0.076 0.924 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.191 0.809 24 H 0.215 0.785 25 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 23.671 -4.295 0.066 24.058 hybrid contribution -1.103 0.650 -0.037 1.281 sum 22.568 -3.645 0.029 22.861 Atomic orbital electron populations 1.70087 1.08568 1.28196 1.52442 1.25985 0.95600 1.03404 0.93835 0.85791 0.80343 0.77793 0.79705 1.18724 1.20927 1.15021 1.21367 0.91474 0.93670 1.50893 0.95058 1.20564 0.95417 0.92605 1.00450 1.22980 0.87396 0.92549 0.71119 1.90486 1.59430 1.47843 1.36209 1.20398 0.95543 0.93053 1.09165 1.21421 0.92609 0.87503 1.01254 1.98414 1.62844 1.44817 1.96141 1.21590 0.88626 1.03216 0.99903 1.21874 1.02298 0.89566 0.92690 1.21621 0.91736 1.00127 0.99396 1.21331 0.94462 0.85163 1.01379 1.98435 1.88659 1.18860 1.95918 0.92418 0.90701 0.91139 0.80948 0.78475 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.52 13.96 21.45 0.30 -62.22 15 2 C 0.01 0.50 5.47 84.66 0.46 0.96 15 3 Si 0.94 43.91 27.47 68.60 1.88 45.80 15 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 6 H -0.23 -9.28 6.16 99.48 0.61 -8.66 15 7 C -0.54 -33.24 9.48 25.60 0.24 -33.00 15 8 H 0.03 2.24 7.00 -2.91 -0.02 2.22 15 9 C -0.05 -2.62 2.34 29.10 0.07 -2.55 15 10 C 0.38 17.63 7.10 27.98 0.20 17.82 15 11 O -0.46 -24.57 13.08 -3.00 -0.04 -24.61 15 12 C -0.18 -6.18 5.87 -20.12 -0.12 -6.29 15 13 C 0.00 -0.01 6.36 22.66 0.14 0.13 15 14 Cl -0.05 -1.72 26.03 -2.72 -0.07 -1.79 15 15 C -0.11 -2.03 9.81 22.25 0.22 -1.81 15 16 C -0.05 -0.55 10.03 22.33 0.22 -0.33 15 17 C -0.11 -1.81 9.81 22.25 0.22 -1.59 15 18 C 0.00 0.11 6.36 22.65 0.14 0.25 15 19 Cl -0.05 -1.46 22.62 -2.72 -0.06 -1.52 15 20 H 0.27 16.19 8.31 -92.70 -0.77 15.42 15 21 H 0.08 3.46 5.49 -2.39 -0.01 3.44 15 22 H 0.07 3.24 5.86 -2.38 -0.01 3.23 15 23 H 0.17 1.97 8.06 -2.91 -0.02 1.94 15 24 H 0.20 0.34 8.06 -2.91 -0.02 0.31 15 25 H 0.18 1.69 8.06 -2.91 -0.02 1.66 15 Total: -1.00 -79.44 247.01 4.95 -74.48 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: 1.14 Total: -3.74 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 1.80 Total: -26.40 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.30 Total: -62.22 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.13 Total: -3.31 kcal Total: -79.44 4.95 -74.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426767.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.748 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds