Wall clock time and date at job start Mon Mar 30 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21255 * 120.00301 * 359.97438 * 10 9 7 12 12 C 1.47091 * 119.99801 * 180.02562 * 10 9 7 13 13 C 1.39912 * 120.15533 * 179.97438 * 12 10 9 14 14 C 1.37805 * 119.86711 * 179.97438 * 13 12 10 15 15 C 1.38557 * 120.17260 * 0.02562 * 14 13 12 16 16 Cl 1.73601 * 119.84404 * 180.02562 * 15 14 13 17 17 C 1.38653 * 120.31165 * 0.02562 * 15 14 13 18 18 Cl 1.73599 * 119.93489 * 179.97438 * 17 15 14 19 19 C 1.37958 * 120.13020 * 359.67444 * 17 15 14 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08008 * 120.06378 * 0.02562 * 13 12 10 24 24 H 1.07998 * 119.90803 * 179.97438 * 14 13 12 25 25 H 1.07996 * 120.08977 * 180.30108 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 3.4224 -3.4232 -0.0097 12 6 1.7398 -5.0314 -0.0172 13 6 2.6461 -6.0973 -0.0224 14 6 2.1802 -7.3942 -0.0282 15 6 0.8174 -7.6446 -0.0294 16 17 0.2398 -9.2817 -0.0361 17 6 -0.0872 -6.5938 -0.0254 18 17 -1.7925 -6.9187 -0.0276 19 6 0.3653 -5.2906 -0.0133 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 3.7088 -5.9041 -0.0210 24 1 2.8791 -8.2175 -0.0326 25 1 -0.3398 -4.4726 -0.0052 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426771.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:45 Heat of formation + Delta-G solvation = -36.744964 kcal Electronic energy + Delta-G solvation = -13969.500971 eV Core-core repulsion = 11192.485861 eV Total energy + Delta-G solvation = -2777.015110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77172 -37.98643 -36.62622 -36.39414 -33.08360 -31.52157 -30.74055 -28.86861 -24.71263 -23.22225 -22.33797 -19.40561 -17.43934 -16.42707 -15.90858 -15.69966 -14.77686 -14.48202 -14.44845 -13.92943 -13.66779 -13.38380 -12.50936 -12.11580 -11.97821 -11.79467 -11.48150 -11.17175 -11.14272 -10.95766 -10.87157 -10.70099 -10.09843 -9.36564 -9.05536 -8.75624 -8.74307 -8.50186 -6.12893 -4.14189 0.55029 1.03788 1.71907 2.10059 2.74512 3.30065 3.36063 3.41982 3.77326 4.36337 4.52265 4.61813 4.97635 5.15765 5.20151 5.25307 5.60296 5.78392 5.89993 6.15447 6.48092 6.55587 7.08836 7.21172 7.85325 8.09452 8.44663 8.94615 9.51364 10.99005 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.004923 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.214370 B = 5686.716608 C = 6425.778881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.391 3.609 11 O -0.451 6.451 12 C -0.136 4.136 13 C -0.058 4.058 14 C -0.114 4.114 15 C -0.016 4.016 16 Cl -0.055 7.055 17 C -0.044 4.044 18 Cl -0.050 7.050 19 C -0.050 4.050 20 H 0.263 0.737 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.147 0.853 24 H 0.144 0.856 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -16.313 -0.060 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.059 4.059 10 C 0.269 3.731 11 O -0.326 6.326 12 C -0.138 4.138 13 C -0.076 4.076 14 C -0.133 4.133 15 C -0.044 4.044 16 Cl -0.026 7.026 17 C -0.071 4.071 18 Cl -0.021 7.021 19 C -0.069 4.069 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.165 0.835 24 H 0.162 0.838 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.897 -16.251 -0.055 16.276 hybrid contribution -0.006 0.609 -0.019 0.609 sum -0.903 -15.642 -0.074 15.668 Atomic orbital electron populations 1.69946 1.06037 1.27081 1.50529 1.24996 0.94905 0.99505 0.94927 0.86455 0.79876 0.82701 0.78234 1.20545 1.21185 1.19663 1.21145 0.94139 0.89427 1.51068 0.90866 1.19581 0.94963 0.91508 0.99822 1.23364 0.91067 0.88334 0.70360 1.90387 1.19363 1.86980 1.35830 1.21321 0.93088 0.97619 1.01734 1.21567 1.01184 0.90725 0.94152 1.20970 0.92553 0.97954 1.01823 1.20995 0.93505 0.85422 1.04474 1.98379 1.89087 1.18457 1.96633 1.20693 0.85633 0.93534 1.07288 1.98386 1.11152 1.95713 1.96837 1.21569 0.95997 0.94805 0.94545 0.92754 0.92498 0.92505 0.83515 0.83834 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 13.29 55.43 0.74 -24.78 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 7 C -0.52 -14.43 8.92 -34.44 -0.31 -14.73 15 8 H 0.07 2.09 6.75 -52.49 -0.35 1.74 15 9 C -0.02 -0.53 4.07 -29.03 -0.12 -0.65 15 10 C 0.39 8.20 7.11 -30.72 -0.22 7.98 15 11 O -0.45 -10.49 15.45 5.58 0.09 -10.40 15 12 C -0.14 -2.25 5.87 -105.07 -0.62 -2.87 15 13 C -0.06 -0.81 9.59 -39.11 -0.38 -1.18 15 14 C -0.11 -1.35 9.81 -39.62 -0.39 -1.74 15 15 C -0.02 -0.21 6.33 -39.31 -0.25 -0.46 15 16 Cl -0.05 -0.61 27.94 -51.86 -1.45 -2.06 15 17 C -0.04 -0.61 6.31 -39.53 -0.25 -0.86 15 18 Cl -0.05 -0.64 27.94 -51.86 -1.45 -2.09 15 19 C -0.05 -0.76 9.25 -39.07 -0.36 -1.12 15 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 21 H 0.06 1.37 8.08 -51.93 -0.42 0.95 15 22 H 0.06 1.37 8.09 -51.93 -0.42 0.95 15 23 H 0.15 1.94 7.65 -52.48 -0.40 1.53 15 24 H 0.14 1.29 8.06 -52.49 -0.42 0.87 15 25 H 0.16 2.42 7.05 -52.49 -0.37 2.05 15 LS Contribution 262.18 15.07 3.95 3.95 Total: -1.00 -29.10 262.18 -7.65 -36.75 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -1.52 Total: -3.70 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.98 Total: -14.12 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.74 Total: -24.78 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -2.90 Total: -4.15 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.10 -7.65 -36.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426771.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.003 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds