Wall clock time and date at job start Mon Mar 30 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 O 1.21268 * 120.00102 * 359.97438 * 10 9 7 12 12 C 1.47076 * 119.99916 * 180.02562 * 10 9 7 13 13 C 1.39913 * 120.17682 * 359.72818 * 12 10 9 14 14 C 1.37820 * 119.86129 * 179.70055 * 13 12 10 15 15 C 1.38460 * 120.22723 * 0.59456 * 14 13 12 16 16 C 1.38409 * 120.36054 * 359.67710 * 15 14 13 17 17 Cl 1.73594 * 119.93489 * 179.97438 * 16 15 14 18 18 C 1.38215 * 120.13315 * 0.02562 * 16 15 14 19 19 Cl 1.73596 * 120.11657 * 180.02562 * 18 16 15 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.07995 * 120.06817 * 359.97438 * 13 12 10 24 24 H 1.07996 * 119.89018 * 180.29682 * 14 13 12 25 25 H 1.07992 * 119.82199 * 179.69649 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 8 3.4226 -3.4230 -0.0030 12 6 1.7400 -5.0312 -0.0045 13 6 0.3653 -5.2911 0.0004 14 6 -0.0870 -6.5930 -0.0076 15 6 0.8143 -7.6440 -0.0080 16 6 2.1763 -7.3976 -0.0073 17 17 3.2965 -8.7238 -0.0072 18 6 2.6463 -6.0979 -0.0055 19 17 4.3546 -5.7893 -0.0052 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 -0.3400 -4.4733 0.0060 24 1 -1.1481 -6.7941 -0.0086 25 1 0.4527 -8.6616 -0.0094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036303550.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:36 Heat of formation + Delta-G solvation = -26.505494 kcal Electronic energy + Delta-G solvation = -14201.214751 eV Core-core repulsion = 11424.643658 eV Total energy + Delta-G solvation = -2776.571093 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.69428 -37.78547 -36.47874 -36.23633 -33.02946 -31.43436 -30.65020 -28.82852 -24.72350 -23.08506 -22.29156 -19.38178 -17.25057 -16.34748 -15.89823 -15.66577 -14.64353 -14.47493 -14.36452 -14.15489 -13.38237 -13.32739 -12.22470 -12.01080 -11.74639 -11.69779 -11.33790 -11.20401 -11.19998 -10.90915 -10.66800 -10.62237 -10.01020 -9.31553 -8.91631 -8.70575 -8.47700 -8.46898 -6.10854 -4.11145 0.69920 0.98526 1.86590 2.32268 2.89452 3.31939 3.37667 3.44421 3.81106 4.36799 4.52580 4.82909 4.94408 5.11276 5.27711 5.29311 5.47799 5.80277 6.05038 6.22461 6.50168 6.60597 7.12023 7.25066 7.88958 8.14444 8.54464 8.98149 9.54211 11.01255 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.005624 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.036385 B = 4977.211751 C = 5705.102250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.017 4.017 10 C 0.381 3.619 11 O -0.432 6.432 12 C -0.136 4.136 13 C -0.055 4.055 14 C -0.120 4.120 15 C -0.085 4.085 16 C -0.050 4.050 17 Cl -0.058 7.058 18 C 0.006 3.994 19 Cl -0.021 7.021 20 H 0.262 0.738 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.154 0.846 24 H 0.142 0.858 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -16.132 -0.004 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.053 4.053 10 C 0.257 3.743 11 O -0.305 6.305 12 C -0.138 4.138 13 C -0.073 4.073 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.077 4.077 17 Cl -0.029 7.029 18 C -0.023 4.023 19 Cl 0.009 6.991 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.172 0.828 24 H 0.159 0.841 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.157 -15.978 0.001 15.979 hybrid contribution 0.445 0.657 -0.010 0.794 sum 0.602 -15.321 -0.009 15.333 Atomic orbital electron populations 1.69940 1.06030 1.26994 1.50889 1.24982 0.94894 0.99457 0.95009 0.86466 0.79909 0.82734 0.78223 1.20568 1.21227 1.19664 1.21167 0.94213 0.89403 1.50626 0.90814 1.19529 0.94834 0.91355 0.99612 1.23337 0.91400 0.87969 0.71581 1.90473 1.18896 1.86775 1.34362 1.21168 0.93391 0.96358 1.02895 1.21770 0.94310 0.97822 0.93431 1.21207 1.00210 0.91884 1.00537 1.21165 0.90018 1.00690 0.98533 1.20712 0.91458 0.87399 1.08146 1.98370 1.61762 1.45780 1.96957 1.21183 0.87823 0.92053 1.01206 1.98416 1.08866 1.95962 1.95852 0.92836 0.92717 0.92714 0.82843 0.84063 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.85 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.52 -14.46 8.92 -34.44 -0.31 -14.76 15 8 H 0.07 2.14 6.75 -52.49 -0.35 1.79 15 9 C -0.02 -0.40 4.07 -29.03 -0.12 -0.52 15 10 C 0.38 8.31 7.10 -30.73 -0.22 8.09 15 11 O -0.43 -10.42 13.08 5.57 0.07 -10.35 15 12 C -0.14 -2.39 5.87 -105.04 -0.62 -3.01 15 13 C -0.05 -0.78 9.47 -39.11 -0.37 -1.15 15 14 C -0.12 -1.32 10.03 -39.65 -0.40 -1.72 15 15 C -0.09 -0.95 9.82 -39.44 -0.39 -1.33 15 16 C -0.05 -0.68 6.32 -39.53 -0.25 -0.93 15 17 Cl -0.06 -0.72 27.95 -51.86 -1.45 -2.17 15 18 C 0.01 0.09 6.36 -38.94 -0.25 -0.16 15 19 Cl -0.02 -0.36 25.03 -51.86 -1.30 -1.66 15 20 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 21 H 0.06 1.32 8.08 -51.93 -0.42 0.90 15 22 H 0.06 1.32 8.09 -51.93 -0.42 0.90 15 23 H 0.15 2.07 7.05 -52.49 -0.37 1.70 15 24 H 0.14 1.08 8.06 -52.49 -0.42 0.66 15 25 H 0.14 1.14 8.06 -52.49 -0.42 0.72 15 LS Contribution 258.03 15.07 3.89 3.89 Total: -1.00 -30.21 258.03 -7.63 -37.83 By element: Atomic # 1 Polarization: -3.85 SS G_CDS: -1.54 Total: -5.40 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.01 Total: -13.97 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.74 Total: -24.85 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.75 Total: -3.83 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.21 -7.63 -37.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036303550.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.329 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds