Wall clock time and date at job start Mon Mar 30 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 O 1.21268 * 120.00102 * 359.97438 * 10 9 7 12 12 C 1.47076 * 119.99916 * 180.02562 * 10 9 7 13 13 C 1.39913 * 120.17682 * 359.72818 * 12 10 9 14 14 C 1.37820 * 119.86129 * 179.70055 * 13 12 10 15 15 C 1.38460 * 120.22723 * 0.59456 * 14 13 12 16 16 C 1.38409 * 120.36054 * 359.67710 * 15 14 13 17 17 Cl 1.73594 * 119.93489 * 179.97438 * 16 15 14 18 18 C 1.38215 * 120.13315 * 0.02562 * 16 15 14 19 19 Cl 1.73596 * 120.11657 * 180.02562 * 18 16 15 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.07995 * 120.06817 * 359.97438 * 13 12 10 24 24 H 1.07996 * 119.89018 * 180.29682 * 14 13 12 25 25 H 1.07992 * 119.82199 * 179.69649 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 8 3.4226 -3.4230 -0.0030 12 6 1.7400 -5.0312 -0.0045 13 6 0.3653 -5.2911 0.0004 14 6 -0.0870 -6.5930 -0.0076 15 6 0.8143 -7.6440 -0.0080 16 6 2.1763 -7.3976 -0.0073 17 17 3.2965 -8.7238 -0.0072 18 6 2.6463 -6.0979 -0.0055 19 17 4.3546 -5.7893 -0.0052 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 -0.3400 -4.4733 0.0060 24 1 -1.1481 -6.7941 -0.0086 25 1 0.4527 -8.6616 -0.0094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036303550.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:36 Heat of formation + Delta-G solvation = -43.368404 kcal Electronic energy + Delta-G solvation = -14201.945982 eV Core-core repulsion = 11424.643658 eV Total energy + Delta-G solvation = -2777.302324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.00574 -39.26099 -37.52710 -37.49488 -35.12174 -32.76686 -31.75669 -30.65424 -26.45299 -24.50824 -23.50303 -20.87592 -18.75091 -18.13461 -17.23423 -16.91463 -16.45031 -15.98902 -15.78665 -15.18191 -15.05352 -14.77705 -14.11802 -13.24183 -13.09425 -12.92507 -12.84996 -12.77241 -12.55809 -12.42778 -12.34766 -12.06959 -11.83564 -11.39593 -10.61685 -10.14658 -10.05309 -9.80290 -8.24833 -6.31693 -0.50307 -0.08848 0.77105 1.16203 1.39702 1.40099 1.49990 1.52303 2.40098 2.53797 3.10668 3.14780 3.79524 3.84964 4.12848 4.24237 4.28609 4.74233 4.91875 5.06505 5.17920 5.19905 5.29192 5.56007 5.72001 6.12239 6.77183 6.84931 7.36823 8.86837 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.037674 B = 0.005624 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.036385 B = 4977.211751 C = 5705.102250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.054 0.946 9 C -0.013 4.013 10 C 0.384 3.616 11 O -0.467 6.467 12 C -0.165 4.165 13 C -0.056 4.056 14 C -0.099 4.099 15 C -0.062 4.062 16 C -0.056 4.056 17 Cl -0.047 7.047 18 C -0.010 4.010 19 Cl -0.044 7.044 20 H 0.267 0.733 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.155 0.845 24 H 0.188 0.812 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -17.817 -0.028 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.050 4.050 10 C 0.263 3.737 11 O -0.343 6.343 12 C -0.167 4.167 13 C -0.074 4.074 14 C -0.117 4.117 15 C -0.081 4.081 16 C -0.084 4.084 17 Cl -0.018 7.018 18 C -0.038 4.038 19 Cl -0.014 7.014 20 H 0.076 0.924 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.173 0.827 24 H 0.206 0.794 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.444 -17.674 -0.024 17.732 hybrid contribution 0.849 1.060 -0.003 1.358 sum -0.595 -16.614 -0.027 16.624 Atomic orbital electron populations 1.70002 1.06934 1.28012 1.51064 1.25698 0.95808 1.02428 0.94521 0.85565 0.78560 0.79133 0.78509 1.19798 1.19884 1.20112 1.21420 0.93703 0.91671 1.51343 0.92807 1.19394 0.95025 0.91402 0.99161 1.23238 0.90327 0.89756 0.70429 1.90449 1.19871 1.87678 1.36347 1.20695 0.95161 0.93837 1.07024 1.21923 0.92616 0.99804 0.93055 1.21680 1.02483 0.89944 0.97564 1.21725 0.88492 1.02822 0.95047 1.20901 0.92885 0.86572 1.08033 1.98377 1.61801 1.44706 1.96887 1.21290 0.86591 0.93212 1.02749 1.98400 1.10733 1.96187 1.96088 0.92389 0.93079 0.93082 0.82709 0.79433 0.79976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.60 13.29 21.45 0.28 -52.32 15 2 C 0.01 0.82 5.46 84.66 0.46 1.28 15 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 15 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 7 C -0.54 -31.41 8.92 25.60 0.23 -31.18 15 8 H 0.05 3.26 6.75 -2.91 -0.02 3.24 15 9 C -0.01 -0.65 4.07 29.10 0.12 -0.53 15 10 C 0.38 17.35 7.10 28.01 0.20 17.55 15 11 O -0.47 -23.66 13.08 -2.99 -0.04 -23.70 15 12 C -0.17 -5.79 5.87 -20.14 -0.12 -5.91 15 13 C -0.06 -1.46 9.47 22.58 0.21 -1.25 15 14 C -0.10 -1.72 10.03 22.22 0.22 -1.49 15 15 C -0.06 -1.10 9.82 22.36 0.22 -0.88 15 16 C -0.06 -1.41 6.32 22.31 0.14 -1.27 15 17 Cl -0.05 -1.06 27.95 -2.72 -0.08 -1.14 15 18 C -0.01 -0.34 6.36 22.68 0.14 -0.20 15 19 Cl -0.04 -1.57 25.03 -2.72 -0.07 -1.64 15 20 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 21 H 0.05 2.55 8.08 -2.39 -0.02 2.53 15 22 H 0.05 2.55 8.09 -2.39 -0.02 2.53 15 23 H 0.16 3.98 7.05 -2.91 -0.02 3.96 15 24 H 0.19 1.62 8.06 -2.91 -0.02 1.59 15 25 H 0.18 1.76 8.06 -2.91 -0.02 1.74 15 Total: -1.00 -67.31 258.03 5.18 -62.12 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: 1.22 Total: -6.34 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 1.83 Total: -23.88 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.28 Total: -52.32 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.04 Total: -23.70 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.14 Total: -2.78 kcal Total: -67.31 5.18 -62.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036303550.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.754 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds