Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00317 * 2 1 4 4 H 1.48500 * 109.47074 * 269.99781 * 3 2 1 5 5 H 1.48504 * 109.46944 * 29.99370 * 3 2 1 6 6 H 1.48501 * 109.47432 * 149.99220 * 3 2 1 7 7 C 1.37878 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99989 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99547 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46963 * 179.97438 * 9 7 2 11 11 O 1.21255 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.47171 * 119.99923 * 180.02562 * 10 9 7 13 13 C 1.39845 * 120.15607 * 180.02562 * 12 10 9 14 14 C 1.38013 * 119.83625 * 179.97438 * 13 12 10 15 15 Cl 1.73595 * 119.92176 * 179.97438 * 14 13 12 16 16 C 1.38499 * 120.15717 * 359.97438 * 14 13 12 17 17 C 1.38488 * 120.32456 * 0.02562 * 16 14 13 18 18 Cl 1.73602 * 119.91761 * 179.97438 * 17 16 14 19 19 C 1.38010 * 120.16266 * 359.97438 * 17 16 14 20 20 H 0.97006 * 119.99482 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47005 * 60.00165 * 9 7 2 22 22 H 1.08994 * 109.47392 * 300.00018 * 9 7 2 23 23 H 1.07998 * 120.07906 * 359.69882 * 13 12 10 24 24 H 1.08001 * 119.83298 * 179.97438 * 16 14 13 25 25 H 1.08005 * 120.08112 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6150 0.0023 11 8 3.2258 -3.5366 0.0021 12 6 5.4607 -2.8839 0.0036 13 6 5.9304 -4.2011 0.0041 14 6 7.2887 -4.4457 0.0048 15 17 7.8742 -6.0800 0.0061 16 6 8.1858 -3.3905 0.0044 17 6 7.7278 -2.0835 0.0039 18 17 8.8616 -0.7689 0.0041 19 6 6.3724 -1.8236 0.0032 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 5.2320 -5.0248 0.0085 24 1 9.2476 -3.5880 0.0054 25 1 6.0168 -0.8038 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037425096.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = -31.873658 kcal Electronic energy + Delta-G solvation = -14001.212758 eV Core-core repulsion = 11224.408884 eV Total energy + Delta-G solvation = -2776.803874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.91658 -38.07961 -36.94378 -36.31556 -33.01381 -31.67770 -30.87439 -29.52311 -24.91126 -23.09427 -22.27388 -19.44685 -17.59315 -16.67243 -16.06166 -15.82347 -14.71102 -14.63861 -14.57869 -14.30808 -13.69239 -13.54033 -12.54073 -12.42508 -12.34287 -11.81543 -11.72807 -11.36936 -11.16464 -11.12966 -10.96439 -10.65578 -10.02508 -9.37229 -9.12083 -8.93983 -8.93313 -8.65299 -6.11345 -4.12616 0.50944 0.82736 1.59953 2.06423 2.62398 3.22153 3.27821 3.31158 3.62134 4.29049 4.34169 4.70414 4.77464 4.97996 5.09116 5.19559 5.20165 5.74884 5.79809 5.99151 6.25593 6.34255 6.54462 6.78986 7.50183 8.19923 8.45976 9.03740 9.46300 11.01499 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.006097 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.506229 B = 4591.075883 C = 5823.438454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.091 0.909 9 C -0.056 4.056 10 C 0.399 3.601 11 O -0.434 6.434 12 C -0.127 4.127 13 C -0.058 4.058 14 C -0.037 4.037 15 Cl -0.059 7.059 16 C -0.086 4.086 17 C -0.037 4.037 18 Cl -0.058 7.058 19 C -0.061 4.061 20 H 0.265 0.735 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.150 0.850 24 H 0.145 0.855 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.430 -4.750 0.031 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.109 0.891 9 C -0.093 4.093 10 C 0.275 3.725 11 O -0.307 6.307 12 C -0.128 4.128 13 C -0.077 4.077 14 C -0.064 4.064 15 Cl -0.030 7.030 16 C -0.106 4.106 17 C -0.064 4.064 18 Cl -0.029 7.029 19 C -0.080 4.080 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.168 0.832 24 H 0.163 0.837 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 18.987 -5.154 0.035 19.674 hybrid contribution 0.696 0.987 -0.015 1.208 sum 19.684 -4.167 0.020 20.120 Atomic orbital electron populations 1.69897 1.06235 1.26995 1.50132 1.24979 0.94789 0.98835 0.94482 0.86911 0.80430 0.84001 0.78735 1.19971 1.21011 1.18906 1.20979 0.87782 0.95728 1.51625 0.89147 1.20019 0.99949 0.90427 0.98921 1.22842 0.84914 0.93576 0.71196 1.90442 1.57837 1.47886 1.34542 1.21102 0.97530 0.92259 1.01946 1.21506 0.93573 0.97811 0.94781 1.20626 0.93385 0.86092 1.06279 1.98381 1.88669 1.18999 1.96972 1.21011 1.00520 0.89618 0.99404 1.20639 0.90761 0.88819 1.06151 1.98386 1.60480 1.47071 1.96957 1.21600 0.90280 1.01042 0.95075 0.92477 0.92670 0.93105 0.83189 0.83749 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.36 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 3 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.26 -5.62 6.54 56.52 0.37 -5.25 15 7 C -0.52 -14.69 9.48 -34.44 -0.33 -15.01 15 8 H 0.09 2.86 7.00 -52.49 -0.37 2.49 15 9 C -0.06 -1.25 3.14 -29.03 -0.09 -1.34 15 10 C 0.40 8.10 7.11 -30.68 -0.22 7.88 15 11 O -0.43 -10.16 15.45 5.58 0.09 -10.08 15 12 C -0.13 -2.00 5.87 -105.07 -0.62 -2.62 15 13 C -0.06 -0.82 9.38 -39.06 -0.37 -1.19 15 14 C -0.04 -0.45 6.31 -39.57 -0.25 -0.70 15 15 Cl -0.06 -0.64 28.95 -51.86 -1.50 -2.14 15 16 C -0.09 -0.95 9.60 -39.39 -0.38 -1.33 15 17 C -0.04 -0.44 6.31 -39.57 -0.25 -0.69 15 18 Cl -0.06 -0.63 28.95 -51.86 -1.50 -2.13 15 19 C -0.06 -0.84 9.25 -39.07 -0.36 -1.20 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.06 1.15 7.14 -51.93 -0.37 0.78 15 22 H 0.05 1.05 7.52 -51.93 -0.39 0.66 15 23 H 0.15 2.14 7.65 -52.49 -0.40 1.74 15 24 H 0.14 1.27 8.06 -52.49 -0.42 0.85 15 25 H 0.15 2.00 7.05 -52.48 -0.37 1.63 15 LS Contribution 260.16 15.07 3.92 3.92 Total: -1.00 -30.17 260.16 -7.34 -37.51 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -1.49 Total: -2.00 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.95 Total: -14.27 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.36 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -3.00 Total: -4.27 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.17 -7.34 -37.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037425096.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.636 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds