Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00317 * 2 1 4 4 H 1.48500 * 109.47074 * 269.99781 * 3 2 1 5 5 H 1.48504 * 109.46944 * 29.99370 * 3 2 1 6 6 H 1.48501 * 109.47432 * 149.99220 * 3 2 1 7 7 C 1.37878 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99989 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99547 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46963 * 179.97438 * 9 7 2 11 11 O 1.21255 * 120.00061 * 0.02562 * 10 9 7 12 12 C 1.47171 * 119.99923 * 180.02562 * 10 9 7 13 13 C 1.39845 * 120.15607 * 180.02562 * 12 10 9 14 14 C 1.38013 * 119.83625 * 179.97438 * 13 12 10 15 15 Cl 1.73595 * 119.92176 * 179.97438 * 14 13 12 16 16 C 1.38499 * 120.15717 * 359.97438 * 14 13 12 17 17 C 1.38488 * 120.32456 * 0.02562 * 16 14 13 18 18 Cl 1.73602 * 119.91761 * 179.97438 * 17 16 14 19 19 C 1.38010 * 120.16266 * 359.97438 * 17 16 14 20 20 H 0.97006 * 119.99482 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47005 * 60.00165 * 9 7 2 22 22 H 1.08994 * 109.47392 * 300.00018 * 9 7 2 23 23 H 1.07998 * 120.07906 * 359.69882 * 13 12 10 24 24 H 1.08001 * 119.83298 * 179.97438 * 16 14 13 25 25 H 1.08005 * 120.08112 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6150 0.0023 11 8 3.2258 -3.5366 0.0021 12 6 5.4607 -2.8839 0.0036 13 6 5.9304 -4.2011 0.0041 14 6 7.2887 -4.4457 0.0048 15 17 7.8742 -6.0800 0.0061 16 6 8.1858 -3.3905 0.0044 17 6 7.7278 -2.0835 0.0039 18 17 8.8616 -0.7689 0.0041 19 6 6.3724 -1.8236 0.0032 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 5.2320 -5.0248 0.0085 24 1 9.2476 -3.5880 0.0054 25 1 6.0168 -0.8038 0.0032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037425096.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = -49.695852 kcal Electronic energy + Delta-G solvation = -14001.985586 eV Core-core repulsion = 11224.408884 eV Total energy + Delta-G solvation = -2777.576702 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.995 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16538 -39.47407 -37.84520 -37.27396 -35.07228 -33.03309 -31.94935 -31.21424 -26.50904 -24.39706 -23.57213 -20.88112 -19.24533 -18.24873 -17.28133 -16.95281 -16.31210 -16.07355 -16.03734 -15.47674 -15.20620 -14.85780 -14.31894 -13.47311 -13.42104 -13.33942 -12.93160 -12.87951 -12.41900 -12.28944 -12.13799 -12.02196 -11.81364 -11.52495 -10.78926 -10.56046 -10.16289 -9.91376 -8.27120 -6.36314 -0.61801 -0.18426 0.66582 1.13082 1.29127 1.41402 1.44905 1.54842 2.38468 2.40505 2.98180 3.07093 3.74438 3.77694 3.89086 3.99323 4.13348 4.54613 4.71156 4.80302 4.86751 5.03503 5.04271 5.24504 5.53019 6.23934 6.68782 6.76818 7.27703 8.90200 Molecular weight = 258.00amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.006097 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.506229 B = 4591.075883 C = 5823.438454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.224 1.224 7 C -0.541 4.541 8 H 0.031 0.969 9 C -0.058 4.058 10 C 0.402 3.598 11 O -0.484 6.484 12 C -0.144 4.144 13 C -0.061 4.061 14 C -0.037 4.037 15 Cl -0.044 7.044 16 C -0.065 4.065 17 C -0.035 4.035 18 Cl -0.039 7.039 19 C -0.056 4.056 20 H 0.268 0.732 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.140 0.860 24 H 0.175 0.825 25 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.474 -3.270 0.058 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.146 1.146 7 C -0.579 4.579 8 H 0.049 0.951 9 C -0.095 4.095 10 C 0.282 3.718 11 O -0.361 6.361 12 C -0.146 4.146 13 C -0.080 4.080 14 C -0.064 4.064 15 Cl -0.015 7.015 16 C -0.084 4.084 17 C -0.062 4.062 18 Cl -0.010 7.010 19 C -0.075 4.075 20 H 0.077 0.923 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.158 0.842 24 H 0.192 0.808 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 23.072 -3.690 0.063 23.365 hybrid contribution -0.522 0.415 -0.028 0.667 sum 22.550 -3.275 0.035 22.787 Atomic orbital electron populations 1.70097 1.08835 1.28427 1.51932 1.26133 0.95727 1.03901 0.93569 0.85640 0.80181 0.76991 0.79761 1.18572 1.21363 1.14625 1.21221 0.91218 0.93767 1.51714 0.95109 1.20025 0.95903 0.92652 1.00935 1.22945 0.87059 0.92296 0.69543 1.90433 1.59673 1.48730 1.37267 1.20474 0.94726 0.93755 1.05635 1.21444 0.94635 0.96997 0.94954 1.20597 0.92601 0.87259 1.05907 1.98393 1.88279 1.17990 1.96869 1.21345 1.01768 0.88800 0.96461 1.20629 0.90407 0.89703 1.05487 1.98402 1.59536 1.46265 1.96821 1.21639 0.90772 1.00696 0.94366 0.92336 0.90282 0.90461 0.84222 0.80785 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.22 13.96 21.45 0.30 -59.93 15 2 C 0.00 0.19 5.47 84.65 0.46 0.66 15 3 Si 0.95 40.79 27.47 68.60 1.88 42.68 15 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 15 6 H -0.22 -8.07 6.54 99.48 0.65 -7.42 15 7 C -0.54 -31.54 9.48 25.60 0.24 -31.30 15 8 H 0.03 2.10 7.00 -2.91 -0.02 2.08 15 9 C -0.06 -2.54 3.14 29.10 0.09 -2.45 15 10 C 0.40 16.60 7.11 28.03 0.20 16.80 15 11 O -0.48 -24.08 15.45 -2.95 -0.05 -24.12 15 12 C -0.14 -4.41 5.87 -20.16 -0.12 -4.53 15 13 C -0.06 -1.69 9.38 22.61 0.21 -1.47 15 14 C -0.04 -0.79 6.31 22.28 0.14 -0.65 15 15 Cl -0.04 -0.85 28.95 -2.72 -0.08 -0.93 15 16 C -0.06 -1.17 9.60 22.39 0.22 -0.96 15 17 C -0.04 -0.71 6.31 22.28 0.14 -0.57 15 18 Cl -0.04 -0.68 28.95 -2.72 -0.08 -0.76 15 19 C -0.06 -1.37 9.25 22.60 0.21 -1.16 15 20 H 0.27 15.64 8.31 -92.70 -0.77 14.87 15 21 H 0.08 3.09 7.14 -2.39 -0.02 3.07 15 22 H 0.08 2.98 7.52 -2.39 -0.02 2.97 15 23 H 0.14 4.08 7.65 -2.91 -0.02 4.06 15 24 H 0.17 2.17 8.06 -2.91 -0.02 2.14 15 25 H 0.16 3.60 7.05 -2.91 -0.02 3.58 15 Total: -1.00 -69.89 260.16 4.95 -64.94 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.17 Total: 3.75 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 1.80 Total: -25.63 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.68 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.16 Total: -1.69 kcal Total: -69.89 4.95 -64.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037425096.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.247 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds