Wall clock time and date at job start Mon Mar 30 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47436 * 2 1 4 4 H 1.08998 * 109.47201 * 55.30574 * 3 2 1 5 5 C 1.50693 * 109.47130 * 175.31095 * 3 2 1 6 6 H 1.08002 * 120.00226 * 114.45674 * 5 3 2 7 7 C 1.37881 * 120.00258 * 294.72637 * 5 3 2 8 8 N 1.31515 * 119.99496 * 353.22543 * 7 5 3 9 9 Si 1.86797 * 120.00065 * 173.22407 * 7 5 3 10 10 H 1.48493 * 109.47338 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47258 * 120.00422 * 9 7 5 12 12 H 1.48504 * 109.46799 * 239.99880 * 9 7 5 13 13 N 1.46504 * 109.46492 * 295.30969 * 3 2 1 14 14 C 1.35012 * 126.03357 * 274.70877 * 13 3 2 15 15 C 1.35375 * 107.72753 * 179.88235 * 14 13 3 16 16 Br 1.89093 * 126.04239 * 180.15408 * 15 14 13 17 17 C 1.39915 * 107.90821 * 0.38692 * 15 14 13 18 18 N 1.30847 * 108.21185 * 359.76435 * 17 15 14 19 19 H 1.09002 * 109.47032 * 185.45519 * 1 2 3 20 20 H 1.08996 * 109.47292 * 305.45316 * 1 2 3 21 21 H 1.08999 * 109.46837 * 65.45367 * 1 2 3 22 22 H 1.08997 * 109.47424 * 239.99450 * 2 1 3 23 23 H 1.09000 * 109.46951 * 119.99924 * 2 1 3 24 24 H 0.97003 * 119.99656 * 180.02562 * 8 7 5 25 25 H 1.07998 * 126.14012 * 0.02562 * 14 13 3 26 26 H 1.08002 * 125.89166 * 179.77781 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9800 0.8449 5 6 3.5425 1.4440 0.1161 6 1 4.1470 1.8084 -0.7013 7 6 4.1458 0.9749 1.2638 8 7 3.4128 0.6514 2.3068 9 14 6.0040 0.7991 1.3373 10 1 6.5932 1.2258 0.0428 11 1 6.5390 1.6507 2.4299 12 1 6.3570 -0.6197 1.5977 13 7 1.6461 2.0996 -1.2487 14 6 2.3197 2.0525 -2.4179 15 6 1.6272 2.7839 -3.3223 16 35 2.1068 3.0616 -5.1302 17 6 0.4967 3.3024 -2.6814 18 7 0.5072 2.8929 -1.4387 19 1 -0.3633 -1.0230 0.0977 20 1 -0.3634 0.5961 0.8371 21 1 -0.3633 0.4269 -0.9348 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8372 0.3217 3.1143 25 1 3.2438 1.5240 -2.5996 26 1 -0.2551 3.9318 -3.1344 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038054267.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:55 Heat of formation + Delta-G solvation = 62.065690 kcal Electronic energy + Delta-G solvation = -12199.418951 eV Core-core repulsion = 9939.677588 eV Total energy + Delta-G solvation = -2259.741363 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.51802 -35.28331 -32.17182 -31.15418 -30.47768 -28.18667 -26.83932 -23.55582 -21.46932 -20.21471 -19.56928 -16.75901 -16.09207 -14.69441 -14.48894 -13.93935 -13.15743 -12.91406 -12.61150 -12.53120 -11.77089 -11.62128 -11.15016 -10.99279 -10.66673 -10.48558 -10.35471 -10.29200 -10.00844 -9.63230 -9.39730 -8.77891 -8.64607 -7.72823 -6.41078 -4.49959 2.25043 2.59815 3.12137 3.16568 3.20926 3.23936 3.57157 4.18407 4.93510 5.41431 5.46556 5.97670 6.04974 6.14372 6.23325 6.24997 6.66458 6.76289 6.86445 6.96394 7.25450 7.35464 7.50471 7.68597 7.88475 8.43530 8.54884 9.17716 10.66773 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.007218 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.309052 B = 3878.261729 C = 4609.106667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.070 0.930 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.074 3.926 8 N -0.879 5.879 9 Si 0.906 3.094 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.313 5.313 14 C 0.115 3.885 15 C -0.269 4.269 16 Br -0.053 7.053 17 C 0.053 3.947 18 N -0.298 5.298 19 H 0.038 0.962 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.269 0.731 25 H 0.175 0.825 26 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 1.791 -10.704 11.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.088 0.912 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.131 4.131 8 N -0.515 5.515 9 Si 0.733 3.267 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.092 5.092 14 C -0.040 4.040 15 C -0.361 4.361 16 Br 0.030 6.970 17 C -0.133 4.133 18 N -0.120 5.120 19 H 0.057 0.943 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.115 0.885 24 H 0.079 0.921 25 H 0.192 0.808 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.701 1.769 -9.836 10.352 hybrid contribution 1.302 -0.199 -0.259 1.342 sum -1.399 1.570 -10.095 10.312 Atomic orbital electron populations 1.21791 0.97810 0.99763 1.01029 1.21907 0.93339 0.98194 1.02669 1.19459 0.95662 0.89137 0.77586 0.91216 1.21243 0.89161 1.45180 1.02951 0.91208 1.24878 0.99306 0.94308 0.94616 1.69943 1.35948 1.42363 1.03254 0.86300 0.83818 0.78096 0.78537 1.19356 1.20616 1.20472 1.49707 1.14867 1.34244 1.10342 1.22289 0.97953 0.98023 0.85731 1.21553 1.04271 1.17603 0.92680 1.96428 1.93008 1.96799 1.10814 1.23543 0.97562 1.00743 0.91460 1.77374 1.06113 1.11491 1.17062 0.94270 0.93109 0.93921 0.93768 0.88543 0.92103 0.80825 0.80685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.73 37.16 0.36 -2.52 15 2 C -0.12 -2.69 5.49 -26.73 -0.15 -2.84 15 3 C 0.28 6.67 2.58 -69.08 -0.18 6.49 15 4 H 0.07 1.86 8.11 -51.93 -0.42 1.44 15 5 C -0.55 -13.73 8.29 -34.44 -0.29 -14.01 15 6 H 0.07 1.73 6.58 -52.49 -0.35 1.38 15 7 C 0.07 1.87 5.21 -17.82 -0.09 1.77 15 8 N -0.88 -22.99 12.02 55.43 0.67 -22.33 15 9 Si 0.91 19.65 29.54 -169.99 -5.02 14.63 15 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 13 N -0.31 -6.87 3.08 -55.96 -0.17 -7.04 15 14 C 0.11 2.28 10.30 -17.17 -0.18 2.10 15 15 C -0.27 -4.85 6.53 -39.97 -0.26 -5.11 15 16 Br -0.05 -0.79 34.08 -68.01 -2.32 -3.10 15 17 C 0.05 0.96 12.01 -17.34 -0.21 0.75 15 18 N -0.30 -6.29 12.22 30.64 0.37 -5.92 15 19 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.04 0.84 7.55 -51.93 -0.39 0.45 15 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.10 2.30 6.68 -51.93 -0.35 1.95 15 24 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 25 H 0.17 3.24 7.45 -52.49 -0.39 2.85 15 26 H 0.18 2.55 8.06 -52.49 -0.42 2.13 15 LS Contribution 249.55 15.07 3.76 3.76 Total: -1.00 -25.74 249.55 -6.42 -32.16 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.72 Total: 1.21 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.99 Total: -13.37 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.87 Total: -35.28 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -2.32 Total: -3.10 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -25.74 -6.42 -32.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038054267.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.223 kcal (2) G-P(sol) polarization free energy of solvation -25.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds