Wall clock time and date at job start Mon Mar 30 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47436 * 2 1 4 4 H 1.08998 * 109.47201 * 55.30574 * 3 2 1 5 5 C 1.50693 * 109.47130 * 175.31095 * 3 2 1 6 6 H 1.08002 * 120.00226 * 114.45674 * 5 3 2 7 7 C 1.37881 * 120.00258 * 294.72637 * 5 3 2 8 8 N 1.31515 * 119.99496 * 353.22543 * 7 5 3 9 9 Si 1.86797 * 120.00065 * 173.22407 * 7 5 3 10 10 H 1.48493 * 109.47338 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47258 * 120.00422 * 9 7 5 12 12 H 1.48504 * 109.46799 * 239.99880 * 9 7 5 13 13 N 1.46504 * 109.46492 * 295.30969 * 3 2 1 14 14 C 1.35012 * 126.03357 * 274.70877 * 13 3 2 15 15 C 1.35375 * 107.72753 * 179.88235 * 14 13 3 16 16 Br 1.89093 * 126.04239 * 180.15408 * 15 14 13 17 17 C 1.39915 * 107.90821 * 0.38692 * 15 14 13 18 18 N 1.30847 * 108.21185 * 359.76435 * 17 15 14 19 19 H 1.09002 * 109.47032 * 185.45519 * 1 2 3 20 20 H 1.08996 * 109.47292 * 305.45316 * 1 2 3 21 21 H 1.08999 * 109.46837 * 65.45367 * 1 2 3 22 22 H 1.08997 * 109.47424 * 239.99450 * 2 1 3 23 23 H 1.09000 * 109.46951 * 119.99924 * 2 1 3 24 24 H 0.97003 * 119.99656 * 180.02562 * 8 7 5 25 25 H 1.07998 * 126.14012 * 0.02562 * 14 13 3 26 26 H 1.08002 * 125.89166 * 179.77781 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9800 0.8449 5 6 3.5425 1.4440 0.1161 6 1 4.1470 1.8084 -0.7013 7 6 4.1458 0.9749 1.2638 8 7 3.4128 0.6514 2.3068 9 14 6.0040 0.7991 1.3373 10 1 6.5932 1.2258 0.0428 11 1 6.5390 1.6507 2.4299 12 1 6.3570 -0.6197 1.5977 13 7 1.6461 2.0996 -1.2487 14 6 2.3197 2.0525 -2.4179 15 6 1.6272 2.7839 -3.3223 16 35 2.1068 3.0616 -5.1302 17 6 0.4967 3.3024 -2.6814 18 7 0.5072 2.8929 -1.4387 19 1 -0.3633 -1.0230 0.0977 20 1 -0.3634 0.5961 0.8371 21 1 -0.3633 0.4269 -0.9348 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8372 0.3217 3.1143 25 1 3.2438 1.5240 -2.5996 26 1 -0.2551 3.9318 -3.1344 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038054267.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:55 Heat of formation + Delta-G solvation = 48.493586 kcal Electronic energy + Delta-G solvation = -12200.007482 eV Core-core repulsion = 9939.677588 eV Total energy + Delta-G solvation = -2260.329894 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.06582 -37.05496 -34.02340 -32.59352 -32.07284 -29.70070 -28.60660 -25.34804 -23.10765 -21.73836 -21.26204 -18.55605 -17.86023 -16.39496 -16.15878 -15.55576 -14.77908 -14.56780 -14.18849 -14.00645 -13.48808 -13.39077 -12.91827 -12.70338 -12.25135 -12.15684 -11.93191 -11.82322 -11.70964 -11.24180 -10.93608 -10.66168 -10.29540 -9.21543 -8.32692 -6.48199 0.82986 1.04393 1.40950 1.44059 1.54735 1.72721 1.96714 2.38166 3.00511 3.89533 4.04159 4.28327 4.37539 4.55444 4.64050 4.72588 4.90555 5.10821 5.17346 5.35992 5.51464 5.54763 5.66559 5.88643 6.15109 6.63589 6.87263 7.23082 8.75485 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.007218 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.309052 B = 3878.261729 C = 4609.106667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.288 3.712 4 H 0.030 0.970 5 C -0.560 4.560 6 H 0.070 0.930 7 C 0.032 3.968 8 N -0.907 5.907 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.334 5.334 14 C 0.102 3.898 15 C -0.267 4.267 16 Br -0.018 7.018 17 C 0.063 3.937 18 N -0.330 5.330 19 H 0.062 0.938 20 H 0.040 0.960 21 H 0.040 0.960 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.271 0.729 25 H 0.181 0.819 26 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 1.885 -12.264 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C 0.189 3.811 4 H 0.048 0.952 5 C -0.598 4.598 6 H 0.088 0.912 7 C -0.171 4.171 8 N -0.544 5.544 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.112 5.112 14 C -0.052 4.052 15 C -0.358 4.358 16 Br 0.065 6.935 17 C -0.123 4.123 18 N -0.152 5.152 19 H 0.081 0.919 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.198 0.802 26 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.371 1.867 -11.419 11.811 hybrid contribution 1.159 -0.153 0.108 1.174 sum -1.211 1.714 -11.311 11.504 Atomic orbital electron populations 1.21657 0.95997 1.01048 1.00439 1.21746 0.94886 0.96949 1.01705 1.19091 0.94922 0.89581 0.77537 0.95178 1.21494 0.90038 1.45193 1.03109 0.91222 1.25635 1.03293 0.93915 0.94223 1.70043 1.37603 1.43023 1.03747 0.85353 0.78877 0.78127 0.78468 1.18777 1.20713 1.19839 1.49472 1.15896 1.35527 1.10336 1.22567 0.98390 0.98652 0.85545 1.21761 1.03633 1.16226 0.94211 1.96462 1.92823 1.96610 1.07653 1.24166 0.97918 0.99754 0.90463 1.77345 1.06440 1.12474 1.18907 0.91858 0.94101 0.94100 0.93359 0.90613 0.91943 0.80213 0.77155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 9.73 71.98 0.70 -4.55 15 2 C -0.11 -5.08 5.49 30.59 0.17 -4.91 15 3 C 0.29 14.05 2.58 44.24 0.11 14.17 15 4 H 0.03 1.69 8.11 -2.39 -0.02 1.67 15 5 C -0.56 -28.42 8.29 25.60 0.21 -28.21 15 6 H 0.07 3.45 6.58 -2.91 -0.02 3.43 15 7 C 0.03 1.61 5.21 84.66 0.44 2.05 15 8 N -0.91 -48.28 12.02 21.45 0.26 -48.02 15 9 Si 0.97 40.12 29.54 68.60 2.03 42.15 15 10 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 11 H -0.28 -11.64 7.11 99.48 0.71 -10.94 15 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 13 N -0.33 -14.66 3.08 -330.97 -1.02 -15.68 15 14 C 0.10 3.95 10.30 83.54 0.86 4.81 15 15 C -0.27 -9.08 6.53 22.01 0.14 -8.94 15 16 Br -0.02 -0.48 34.08 -20.37 -0.69 -1.18 15 17 C 0.06 2.16 12.01 85.25 1.02 3.19 15 18 N -0.33 -13.74 12.22 -56.99 -0.70 -14.44 15 19 H 0.06 2.13 8.14 -2.39 -0.02 2.12 15 20 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.04 1.59 7.55 -2.39 -0.02 1.58 15 22 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.08 3.68 6.68 -2.39 -0.02 3.67 15 24 H 0.27 13.60 8.31 -92.71 -0.77 12.83 15 25 H 0.18 6.56 7.45 -2.91 -0.02 6.54 15 26 H 0.21 5.44 8.06 -2.91 -0.02 5.42 15 Total: -1.00 -54.47 249.55 4.71 -49.76 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.17 Total: 9.80 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.66 Total: -22.40 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.46 Total: -78.14 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.18 kcal Total: -54.47 4.71 -49.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038054267.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.254 kcal (2) G-P(sol) polarization free energy of solvation -54.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds