Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86795 * 120.00265 * 2 1 4 4 H 1.48504 * 109.46990 * 239.99591 * 3 2 1 5 5 H 1.48492 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47211 * 119.99723 * 3 2 1 7 7 C 1.40285 * 119.99418 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99673 * 187.44387 * 7 2 1 9 9 C 1.40983 * 120.00237 * 7.45547 * 7 2 1 10 10 C 1.40962 * 120.10134 * 211.75757 * 9 7 2 11 11 C 1.36235 * 119.89367 * 179.74315 * 10 9 7 12 12 C 1.40094 * 120.10831 * 0.23063 * 11 10 9 13 13 C 1.47598 * 119.89802 * 179.97438 * 12 11 10 14 14 O 1.21809 * 119.99454 * 154.25627 * 13 12 11 15 15 C 1.46382 * 120.00395 * 334.26007 * 13 12 11 16 16 C 1.36990 * 125.47186 * 173.52713 * 15 13 12 17 17 C 1.37316 * 113.26237 * 179.97438 * 16 15 13 18 18 C 1.33984 * 115.11946 * 359.97438 * 17 16 15 19 19 S 1.70608 * 110.98141 * 359.75068 * 18 17 16 20 20 C 1.40099 * 120.20291 * 0.02562 * 12 11 10 21 21 C 1.36240 * 120.10758 * 359.97438 * 20 12 11 22 22 H 0.97001 * 119.99822 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.05008 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.94766 * 180.24965 * 11 10 9 25 25 H 1.08003 * 123.36986 * 359.94933 * 16 15 13 26 26 H 1.08000 * 122.43991 * 180.02562 * 17 16 15 27 27 H 1.08002 * 124.50565 * 180.02562 * 18 17 16 28 28 H 1.08004 * 119.94482 * 179.97438 * 20 12 11 29 29 H 1.08001 * 120.05738 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0941 1.6962 -1.2125 5 1 1.2754 2.7464 -0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0075 -1.2150 0.0005 8 1 3.0807 -1.2189 0.1217 9 6 1.3114 -2.4308 -0.1573 10 6 1.7844 -3.6025 0.4675 11 6 1.1056 -4.7740 0.3163 12 6 -0.0581 -4.8164 -0.4625 13 6 -0.7896 -6.0882 -0.6235 14 8 -1.9826 -6.0777 -0.8693 15 6 -0.0815 -7.3622 -0.4878 16 6 -0.6664 -8.6009 -0.4900 17 6 0.2352 -9.6266 -0.3464 18 6 1.5149 -9.2470 -0.2308 19 16 1.6573 -7.5485 -0.3046 20 6 -0.5291 -3.6556 -1.0897 21 6 0.1430 -2.4795 -0.9444 22 1 -0.4850 0.8401 -0.0004 23 1 2.6810 -3.5706 1.0687 24 1 1.4650 -5.6714 0.7980 25 1 -1.7303 -8.7554 -0.5938 26 1 -0.0653 -10.6638 -0.3287 27 1 2.3462 -9.9261 -0.1116 28 1 -1.4265 -3.6932 -1.6895 29 1 -0.2210 -1.5851 -1.4280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039188808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = 7.005835 kcal Electronic energy + Delta-G solvation = -15601.561646 eV Core-core repulsion = 12966.753364 eV Total energy + Delta-G solvation = -2634.808282 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.91833 -37.49636 -36.62894 -33.90871 -30.66414 -29.94197 -29.00400 -26.31928 -24.46842 -22.13959 -21.22508 -19.94636 -18.82309 -17.59465 -17.13908 -15.55597 -15.52377 -15.01035 -14.22879 -14.05888 -13.78862 -13.12566 -12.95326 -12.57498 -12.48946 -12.23529 -12.07158 -11.77635 -11.49183 -11.28042 -11.09990 -10.68353 -10.57247 -10.03767 -9.56664 -9.48565 -8.99437 -8.58736 -8.28222 -7.78473 -7.55096 -6.99612 -4.67441 0.70607 1.82465 2.06633 2.26941 2.72852 2.93754 2.94936 2.96356 2.99143 3.70334 3.76204 4.49533 4.80889 5.12124 5.45338 5.54119 5.65037 5.90328 6.04174 6.18553 6.25042 6.51373 6.57349 6.76327 6.80185 7.00088 7.04571 7.38873 7.52633 7.77550 7.84156 8.00956 8.37152 8.40865 8.56991 8.68438 9.91878 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.044408 B = 0.004932 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.359134 B = 5675.970609 C = 6228.064230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.130 3.870 10 C -0.223 4.223 11 C -0.053 4.053 12 C -0.296 4.296 13 C 0.465 3.535 14 O -0.489 6.489 15 C -0.264 4.264 16 C -0.085 4.085 17 C -0.153 4.153 18 C -0.271 4.271 19 S 0.246 5.754 20 C -0.041 4.041 21 C -0.171 4.171 22 H 0.288 0.712 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.146 0.854 26 H 0.134 0.866 27 H 0.160 0.840 28 H 0.099 0.901 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -8.862 -0.180 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.151 4.151 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.127 3.873 10 C -0.242 4.242 11 C -0.072 4.072 12 C -0.299 4.299 13 C 0.349 3.651 14 O -0.372 6.372 15 C -0.383 4.383 16 C -0.117 4.117 17 C -0.184 4.184 18 C -0.409 4.409 19 S 0.515 5.485 20 C -0.060 4.060 21 C -0.190 4.190 22 H 0.099 0.901 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.178 0.822 28 H 0.117 0.883 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.577 -7.728 -0.225 8.984 hybrid contribution -0.820 -0.511 0.112 0.973 sum 3.757 -8.239 -0.114 9.056 Atomic orbital electron populations 1.69684 1.07769 1.30156 1.32576 1.26111 0.94971 1.01839 0.92156 0.86174 0.79987 0.79347 0.80218 1.18543 1.20035 1.18685 1.19805 0.95704 0.90266 1.41248 0.89694 1.17839 0.91060 0.92041 0.86348 1.20755 1.03140 0.93696 1.06639 1.20499 0.93334 0.96517 0.96898 1.19354 1.02122 0.93809 1.14581 1.19430 0.86956 0.86282 0.72420 1.90565 1.16276 1.89484 1.40829 1.25597 0.98008 0.99543 1.15160 1.20849 1.01210 0.90449 0.99156 1.19935 0.92147 1.00424 1.05890 1.25730 1.01595 1.03530 1.10006 1.83556 1.03647 0.96656 1.64650 1.20518 0.96864 0.91844 0.96731 1.21078 0.99040 0.96531 1.02367 0.90106 0.88062 0.88429 0.83646 0.84786 0.82227 0.88304 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.92 10.88 55.56 0.60 -18.32 15 2 C 0.07 1.62 5.29 -17.30 -0.09 1.53 15 3 Si 0.92 17.24 29.57 -169.99 -5.03 12.21 15 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 5 H -0.28 -5.07 7.11 56.52 0.40 -4.67 15 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 7 C -0.44 -10.78 9.04 -37.77 -0.34 -11.12 15 8 H 0.08 1.94 7.86 -52.48 -0.41 1.53 15 9 C 0.13 3.26 5.53 -106.80 -0.59 2.67 15 10 C -0.22 -5.08 9.73 -39.27 -0.38 -5.47 15 11 C -0.05 -1.13 8.48 -39.61 -0.34 -1.47 15 12 C -0.30 -6.79 5.80 -104.68 -0.61 -7.40 15 13 C 0.46 10.10 6.92 -32.49 -0.22 9.87 15 14 O -0.49 -11.63 17.12 5.09 0.09 -11.54 15 15 C -0.26 -4.78 6.24 -36.76 -0.23 -5.01 15 16 C -0.08 -1.33 10.03 -40.37 -0.40 -1.74 15 17 C -0.15 -1.99 10.15 -41.41 -0.42 -2.41 15 18 C -0.27 -3.40 10.93 29.24 0.32 -3.08 15 19 S 0.25 3.65 19.18 -107.50 -2.06 1.59 15 20 C -0.04 -0.98 9.52 -39.60 -0.38 -1.36 15 21 C -0.17 -4.29 8.57 -39.27 -0.34 -4.63 15 22 H 0.29 6.35 8.29 -40.82 -0.34 6.01 15 23 H 0.10 2.10 8.06 -52.49 -0.42 1.68 15 24 H 0.10 1.83 5.07 -35.85 -0.18 1.65 15 25 H 0.15 2.18 8.06 -52.48 -0.42 1.76 15 26 H 0.13 1.38 8.06 -52.49 -0.42 0.95 15 27 H 0.16 1.52 8.06 -52.49 -0.42 1.10 15 28 H 0.10 2.30 7.84 -52.48 -0.41 1.89 15 29 H 0.12 3.15 6.34 -52.49 -0.33 2.82 15 LS Contribution 271.94 15.07 4.10 4.10 Total: -1.00 -27.26 271.94 -8.49 -35.75 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -2.16 Total: 5.81 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -4.02 Total: -29.61 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.60 Total: -18.32 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.06 Total: 1.59 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.26 -8.49 -35.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039188808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.753 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds