Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86795 * 120.00265 * 2 1 4 4 H 1.48504 * 109.46990 * 239.99591 * 3 2 1 5 5 H 1.48492 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47211 * 119.99723 * 3 2 1 7 7 C 1.40285 * 119.99418 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99673 * 187.44387 * 7 2 1 9 9 C 1.40983 * 120.00237 * 7.45547 * 7 2 1 10 10 C 1.40962 * 120.10134 * 211.75757 * 9 7 2 11 11 C 1.36235 * 119.89367 * 179.74315 * 10 9 7 12 12 C 1.40094 * 120.10831 * 0.23063 * 11 10 9 13 13 C 1.47598 * 119.89802 * 179.97438 * 12 11 10 14 14 O 1.21809 * 119.99454 * 154.25627 * 13 12 11 15 15 C 1.46382 * 120.00395 * 334.26007 * 13 12 11 16 16 C 1.36990 * 125.47186 * 173.52713 * 15 13 12 17 17 C 1.37316 * 113.26237 * 179.97438 * 16 15 13 18 18 C 1.33984 * 115.11946 * 359.97438 * 17 16 15 19 19 S 1.70608 * 110.98141 * 359.75068 * 18 17 16 20 20 C 1.40099 * 120.20291 * 0.02562 * 12 11 10 21 21 C 1.36240 * 120.10758 * 359.97438 * 20 12 11 22 22 H 0.97001 * 119.99822 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.05008 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.94766 * 180.24965 * 11 10 9 25 25 H 1.08003 * 123.36986 * 359.94933 * 16 15 13 26 26 H 1.08000 * 122.43991 * 180.02562 * 17 16 15 27 27 H 1.08002 * 124.50565 * 180.02562 * 18 17 16 28 28 H 1.08004 * 119.94482 * 179.97438 * 20 12 11 29 29 H 1.08001 * 120.05738 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0941 1.6962 -1.2125 5 1 1.2754 2.7464 -0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0075 -1.2150 0.0005 8 1 3.0807 -1.2189 0.1217 9 6 1.3114 -2.4308 -0.1573 10 6 1.7844 -3.6025 0.4675 11 6 1.1056 -4.7740 0.3163 12 6 -0.0581 -4.8164 -0.4625 13 6 -0.7896 -6.0882 -0.6235 14 8 -1.9826 -6.0777 -0.8693 15 6 -0.0815 -7.3622 -0.4878 16 6 -0.6664 -8.6009 -0.4900 17 6 0.2352 -9.6266 -0.3464 18 6 1.5149 -9.2470 -0.2308 19 16 1.6573 -7.5485 -0.3046 20 6 -0.5291 -3.6556 -1.0897 21 6 0.1430 -2.4795 -0.9444 22 1 -0.4850 0.8401 -0.0004 23 1 2.6810 -3.5706 1.0687 24 1 1.4650 -5.6714 0.7980 25 1 -1.7303 -8.7554 -0.5938 26 1 -0.0653 -10.6638 -0.3287 27 1 2.3462 -9.9261 -0.1116 28 1 -1.4265 -3.6932 -1.6895 29 1 -0.2210 -1.5851 -1.4280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039188808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = -6.482868 kcal Electronic energy + Delta-G solvation = -15602.146560 eV Core-core repulsion = 12966.753364 eV Total energy + Delta-G solvation = -2635.393196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.046 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57797 -39.07427 -38.06625 -35.69266 -32.36308 -31.74098 -30.44824 -27.99114 -25.84227 -23.75009 -22.97829 -21.55646 -20.07649 -19.35403 -18.65055 -17.23790 -16.90022 -16.51142 -15.90777 -15.70010 -15.24293 -14.77824 -14.53462 -14.19732 -13.74234 -13.68692 -13.58342 -13.40032 -13.00642 -12.80467 -12.70008 -12.41340 -11.94719 -11.60724 -11.31755 -11.19774 -10.69613 -9.81423 -9.63621 -9.47423 -9.36422 -8.74633 -6.53865 -0.60257 0.42814 0.62478 0.98961 1.24033 1.37269 1.40543 1.52866 1.59923 2.12080 2.17768 2.73378 3.31288 3.59785 4.15836 4.25165 4.33698 4.42348 4.52399 4.64995 4.92976 4.98358 5.07251 5.16224 5.21062 5.33433 5.44504 5.55662 5.72318 5.95202 5.98292 6.16198 6.52273 6.72710 6.73541 6.83937 8.19546 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.044408 B = 0.004932 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.359134 B = 5675.970609 C = 6228.064230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.029 3.971 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.469 4.469 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.232 4.232 11 C -0.043 4.043 12 C -0.310 4.310 13 C 0.465 3.535 14 O -0.525 6.525 15 C -0.319 4.319 16 C -0.068 4.068 17 C -0.160 4.160 18 C -0.236 4.236 19 S 0.248 5.752 20 C -0.055 4.055 21 C -0.190 4.190 22 H 0.294 0.706 23 H 0.122 0.878 24 H 0.129 0.871 25 H 0.146 0.854 26 H 0.171 0.829 27 H 0.201 0.799 28 H 0.094 0.906 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -10.798 0.545 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.497 4.497 8 H 0.114 0.886 9 C 0.101 3.899 10 C -0.252 4.252 11 C -0.062 4.062 12 C -0.312 4.312 13 C 0.353 3.647 14 O -0.410 6.410 15 C -0.437 4.437 16 C -0.102 4.102 17 C -0.189 4.189 18 C -0.373 4.373 19 S 0.516 5.484 20 C -0.073 4.073 21 C -0.209 4.209 22 H 0.105 0.895 23 H 0.140 0.860 24 H 0.146 0.854 25 H 0.164 0.836 26 H 0.188 0.812 27 H 0.218 0.782 28 H 0.112 0.888 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.639 -9.675 0.502 11.745 hybrid contribution -1.468 -0.144 -0.121 1.480 sum 5.171 -9.819 0.381 11.104 Atomic orbital electron populations 1.69762 1.09434 1.31463 1.33184 1.27056 0.95631 1.05200 0.90959 0.85056 0.78556 0.74552 0.80478 1.17966 1.19465 1.17814 1.20140 0.96358 0.90882 1.42327 0.88645 1.18192 0.91324 0.93494 0.86880 1.21025 1.04003 0.93427 1.06702 1.20762 0.92267 0.97384 0.95801 1.19689 1.02808 0.94196 1.14513 1.19592 0.86552 0.87495 0.71110 1.90529 1.17693 1.90181 1.42616 1.25228 1.00058 0.98352 1.20028 1.21152 1.01953 0.90434 0.96662 1.20215 0.91665 1.01407 1.05662 1.26180 1.02680 1.02200 1.06282 1.83422 1.01129 0.99127 1.64691 1.20617 0.96894 0.92495 0.97328 1.21011 1.00111 0.96272 1.03516 0.89480 0.85997 0.85379 0.83629 0.81169 0.78154 0.88798 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.87 10.88 21.88 0.24 -40.63 15 2 C 0.03 1.35 5.29 85.37 0.45 1.80 15 3 Si 0.99 35.14 29.57 68.60 2.03 37.17 15 4 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 15 6 H -0.25 -8.60 7.11 99.48 0.71 -7.89 15 7 C -0.47 -23.29 9.04 23.44 0.21 -23.08 15 8 H 0.10 4.36 7.86 -2.91 -0.02 4.34 15 9 C 0.10 5.37 5.53 -21.27 -0.12 5.25 15 10 C -0.23 -10.64 9.73 22.47 0.22 -10.43 15 11 C -0.04 -1.84 8.48 22.25 0.19 -1.65 15 12 C -0.31 -14.61 5.80 -19.90 -0.12 -14.73 15 13 C 0.47 20.68 6.92 26.86 0.19 20.86 15 14 O -0.52 -25.92 17.12 -4.70 -0.08 -26.00 15 15 C -0.32 -11.20 6.24 24.10 0.15 -11.05 15 16 C -0.07 -2.00 10.03 21.76 0.22 -1.78 15 17 C -0.16 -3.44 10.15 21.08 0.21 -3.23 15 18 C -0.24 -4.72 10.93 66.85 0.73 -3.99 15 19 S 0.25 6.68 19.18 -56.49 -1.08 5.60 15 20 C -0.05 -2.78 9.52 22.26 0.21 -2.57 15 21 C -0.19 -10.06 8.57 22.47 0.19 -9.86 15 22 H 0.29 13.35 8.29 -92.71 -0.77 12.58 15 23 H 0.12 4.96 8.06 -2.91 -0.02 4.93 15 24 H 0.13 4.62 5.07 -13.48 -0.07 4.55 15 25 H 0.15 4.17 8.06 -2.91 -0.02 4.15 15 26 H 0.17 2.50 8.06 -2.91 -0.02 2.48 15 27 H 0.20 2.44 8.06 -2.91 -0.02 2.42 15 28 H 0.09 4.71 7.84 -2.91 -0.02 4.69 15 29 H 0.11 5.89 6.34 -2.91 -0.02 5.88 15 Total: -1.00 -61.69 271.94 4.97 -56.72 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.13 Total: 21.58 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 2.74 Total: -54.44 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.24 Total: -40.63 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.08 Total: -26.00 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.08 Total: 5.60 kcal Total: -61.69 4.97 -56.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039188808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.236 kcal (2) G-P(sol) polarization free energy of solvation -61.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds