Wall clock time and date at job start Mon Mar 30 2020 06:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30513 * 1 3 3 Si 1.86805 * 120.00101 * 2 1 4 4 H 1.48503 * 109.47236 * 270.00444 * 3 2 1 5 5 H 1.48506 * 109.46750 * 30.00296 * 3 2 1 6 6 H 1.48491 * 109.46956 * 149.99967 * 3 2 1 7 7 C 1.40462 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.41021 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.21429 * 119.99998 * 359.97438 * 9 7 2 11 11 C 1.50701 * 119.99965 * 180.02562 * 9 7 2 12 12 O 1.42901 * 109.47012 * 179.97438 * 11 9 7 13 13 C 1.35971 * 116.99902 * 179.97438 * 12 11 9 14 14 C 1.38689 * 120.03590 * 0.25602 * 13 12 11 15 15 C 1.38154 * 119.98291 * 180.25501 * 14 13 12 16 16 C 1.38476 * 120.05078 * 359.48616 * 15 14 13 17 17 F 1.35102 * 119.96302 * 180.27955 * 16 15 14 18 18 C 1.38432 * 120.06454 * 0.25792 * 16 15 14 19 19 C 1.38255 * 120.02356 * 0.02562 * 18 16 15 20 20 Cl 1.73595 * 120.02946 * 180.02562 * 19 18 16 21 21 H 0.97006 * 120.00541 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47606 * 59.99734 * 11 9 7 23 23 H 1.09009 * 109.46841 * 299.99618 * 11 9 7 24 24 H 1.07997 * 120.00714 * 359.97438 * 14 13 12 25 25 H 1.08002 * 119.97709 * 179.77131 * 15 14 13 26 26 H 1.08004 * 119.98567 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4866 2.0465 -1.4001 5 1 1.4366 2.6527 0.7001 6 1 3.5366 1.4401 0.7000 7 6 2.0075 -1.2164 -0.0005 8 1 3.0875 -1.2164 -0.0010 9 6 1.3024 -2.4377 -0.0005 10 8 0.0881 -2.4377 0.0004 11 6 2.0559 -3.7428 -0.0005 12 8 1.1273 -4.8290 0.0001 13 6 1.6470 -6.0854 -0.0004 14 6 3.0218 -6.2680 0.0039 15 6 3.5488 -7.5451 -0.0019 16 6 2.7052 -8.6433 -0.0013 17 9 3.2224 -9.8914 -0.0012 18 6 1.3326 -8.4634 -0.0002 19 6 0.8022 -7.1867 -0.0004 20 17 -0.9190 -6.9610 0.0016 21 1 -0.4851 0.8400 0.0004 22 1 2.6826 -3.8006 0.8894 23 1 2.6825 -3.8005 -0.8906 24 1 3.6803 -5.4120 0.0073 25 1 4.6194 -7.6871 -0.0022 26 1 0.6759 -9.3209 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041248867.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:43 Heat of formation + Delta-G solvation = -107.527558 kcal Electronic energy + Delta-G solvation = -16082.787043 eV Core-core repulsion = 12874.366194 eV Total energy + Delta-G solvation = -3208.420849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.86356 -39.90753 -37.49810 -36.22923 -36.02508 -32.74293 -31.05884 -29.65613 -28.30381 -25.90025 -23.11158 -22.25712 -19.82044 -18.24692 -17.24217 -16.84689 -16.19616 -15.77551 -15.29706 -15.27579 -14.82311 -14.31205 -13.94883 -13.41903 -13.30753 -13.09461 -12.71215 -11.92129 -11.86393 -11.47778 -11.26158 -11.07617 -11.01200 -10.67406 -10.46406 -10.35910 -10.23452 -9.03928 -9.02784 -7.90615 -7.54108 -6.39034 -5.06554 0.97455 1.18029 2.27391 2.98341 3.06757 3.10270 3.45381 3.54002 3.96022 4.08444 4.28238 4.66743 4.78982 5.08595 5.22400 5.34285 5.55673 5.76288 5.83738 6.02633 6.10148 6.21123 6.30586 6.61804 7.12304 7.65351 7.88840 8.66471 8.68471 10.20023 10.41068 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.035005 B = 0.004862 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.691607 B = 5757.814774 C = 6542.360762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.365 3.635 10 O -0.518 6.518 11 C 0.012 3.988 12 O -0.269 6.269 13 C 0.145 3.855 14 C -0.179 4.179 15 C -0.105 4.105 16 C 0.052 3.948 17 F -0.141 7.141 18 C -0.107 4.107 19 C -0.054 4.054 20 Cl -0.041 7.041 21 H 0.276 0.724 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.149 0.851 25 H 0.140 0.860 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -11.568 -0.002 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.091 0.909 9 C 0.257 3.743 10 O -0.404 6.404 11 C -0.064 4.064 12 O -0.180 6.180 13 C 0.096 3.904 14 C -0.198 4.198 15 C -0.124 4.124 16 C 0.033 3.967 17 F -0.120 7.120 18 C -0.127 4.127 19 C -0.082 4.082 20 Cl -0.012 7.012 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.166 0.834 25 H 0.158 0.842 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.107 -11.459 0.003 12.546 hybrid contribution 0.906 0.512 -0.009 1.041 sum 6.013 -10.947 -0.005 12.490 Atomic orbital electron populations 1.69943 1.07553 1.28381 1.30511 1.25972 0.94662 1.00994 0.92543 0.86291 0.80318 0.80607 0.79245 1.19323 1.20076 1.18512 1.20519 0.94885 0.90985 1.49974 0.90894 1.19373 0.89495 0.85602 0.79862 1.90475 1.14982 1.87645 1.47268 1.23963 0.93896 0.87928 1.00609 1.86473 1.35607 1.10281 1.85637 1.19096 0.91114 0.86633 0.93605 1.21192 0.93628 0.98226 1.06797 1.20988 1.00394 0.90989 1.00024 1.17221 0.91119 0.79669 1.08705 1.91480 1.87140 1.38788 1.94572 1.20739 0.93879 0.96227 1.01839 1.19883 0.86200 0.91731 1.10380 1.98391 1.08602 1.97375 1.96848 0.91264 0.91451 0.91446 0.83352 0.84198 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.82 11.72 55.57 0.65 -20.17 15 2 C 0.08 2.15 5.50 -17.27 -0.10 2.05 15 3 Si 0.91 18.64 29.56 -169.99 -5.03 13.61 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 7 C -0.53 -14.03 9.22 -37.69 -0.35 -14.38 15 8 H 0.07 1.72 7.85 -52.48 -0.41 1.30 15 9 C 0.36 9.93 6.98 -33.25 -0.23 9.70 15 10 O -0.52 -16.39 15.02 -14.47 -0.22 -16.61 15 11 C 0.01 0.25 5.09 36.01 0.18 0.43 15 12 O -0.27 -5.83 9.13 -39.54 -0.36 -6.19 15 13 C 0.14 2.53 6.68 -39.21 -0.26 2.27 15 14 C -0.18 -2.55 9.04 -39.45 -0.36 -2.90 15 15 C -0.10 -1.29 10.02 -39.52 -0.40 -1.69 15 16 C 0.05 0.68 7.30 -39.42 -0.29 0.39 15 17 F -0.14 -1.79 17.27 2.25 0.04 -1.75 15 18 C -0.11 -1.44 9.80 -39.50 -0.39 -1.83 15 19 C -0.05 -0.88 6.33 -39.37 -0.25 -1.13 15 20 Cl -0.04 -0.69 28.50 -51.86 -1.48 -2.17 15 21 H 0.28 6.99 8.29 -40.82 -0.34 6.65 15 22 H 0.07 1.25 7.65 -51.93 -0.40 0.85 15 23 H 0.07 1.25 7.67 -51.92 -0.40 0.85 15 24 H 0.15 1.88 6.30 -52.49 -0.33 1.55 15 25 H 0.14 1.32 8.06 -52.49 -0.42 0.90 15 26 H 0.15 1.63 8.06 -52.48 -0.42 1.21 15 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -31.52 262.37 -6.39 -37.90 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -1.52 Total: -1.51 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.43 Total: -7.07 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.65 Total: -20.17 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.58 Total: -22.80 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.52 -6.39 -37.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041248867.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.624 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds