Wall clock time and date at job start Mon Mar 30 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38216 * 120.00783 * 264.72404 * 10 9 7 12 12 C 1.38303 * 120.01490 * 179.77331 * 11 10 9 13 13 Br 1.89100 * 119.98272 * 180.27332 * 12 11 10 14 14 C 1.38345 * 120.03045 * 0.50061 * 12 11 10 15 15 C 1.38167 * 120.01934 * 359.75175 * 14 12 11 16 16 C 1.38436 * 120.00734 * 85.00002 * 10 9 7 17 17 F 1.35095 * 120.01847 * 359.97438 * 16 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08004 * 119.99138 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.99110 * 179.72932 * 14 12 11 23 23 H 1.08000 * 120.01017 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5957 -4.2416 -1.1913 12 6 3.4980 -5.2898 -1.1919 13 35 4.0033 -6.1007 -2.8237 14 6 4.0274 -5.7483 0.0012 15 6 3.6590 -5.1560 1.1938 16 6 2.7595 -4.1030 1.1948 17 9 2.3988 -3.5234 2.3605 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.1791 -3.8873 -2.1226 22 1 4.7286 -6.5697 0.0003 23 1 4.0720 -5.5143 2.1252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042302381.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:56 Heat of formation + Delta-G solvation = -33.879732 kcal Electronic energy + Delta-G solvation = -11577.023652 eV Core-core repulsion = 9157.368727 eV Total energy + Delta-G solvation = -2419.654925 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.24799 -38.66654 -33.69539 -31.84004 -31.38841 -28.71701 -27.19284 -23.59574 -22.20478 -20.54819 -17.10007 -16.43568 -16.04470 -15.22041 -14.91439 -14.47650 -13.79003 -12.92724 -12.70345 -12.68898 -12.21283 -11.78871 -11.32989 -11.02181 -10.65362 -10.55231 -10.38298 -10.15623 -9.70984 -9.56908 -8.49425 -8.47608 -7.98787 -6.11134 -4.15640 1.35403 1.61493 1.83595 3.26875 3.34374 3.39242 3.88630 4.40371 4.73468 5.04177 5.24453 5.24939 5.60164 5.65754 6.05500 6.23925 6.42903 6.59248 6.63824 7.22033 7.41907 7.53637 7.83097 8.18421 8.87895 9.48678 10.99054 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.006663 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.507673 B = 4201.555397 C = 4785.302995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.049 3.951 10 C -0.063 4.063 11 C -0.069 4.069 12 C -0.102 4.102 13 Br -0.065 7.065 14 C -0.092 4.092 15 C -0.155 4.155 16 C 0.111 3.889 17 F -0.129 7.129 18 H 0.263 0.737 19 H 0.037 0.963 20 H 0.036 0.964 21 H 0.138 0.862 22 H 0.132 0.868 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.515 -12.800 -3.193 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.012 3.988 10 C -0.065 4.065 11 C -0.089 4.089 12 C -0.181 4.181 13 Br 0.020 6.980 14 C -0.111 4.111 15 C -0.174 4.174 16 C 0.091 3.909 17 F -0.108 7.108 18 H 0.073 0.927 19 H 0.055 0.945 20 H 0.054 0.946 21 H 0.156 0.844 22 H 0.150 0.850 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.536 -12.964 -3.760 15.459 hybrid contribution 0.294 1.221 0.585 1.386 sum 7.830 -11.743 -3.175 14.467 Atomic orbital electron populations 1.69957 1.06047 1.26919 1.50062 1.24986 0.94912 0.99328 0.94884 0.86444 0.80127 0.83257 0.77712 1.19616 1.20822 1.20808 1.21007 0.93017 0.89596 1.51669 0.92385 1.18359 0.92284 0.88914 0.99226 1.20840 0.98270 0.97044 0.90328 1.20957 0.95695 0.93413 0.98793 1.21700 1.03981 1.01209 0.91202 1.96614 1.91666 1.80957 1.28797 1.20661 1.00117 1.00183 0.90189 1.21021 0.99921 0.97505 0.98999 1.17727 0.97318 0.93764 0.82071 1.91499 1.90204 1.83337 1.45718 0.92735 0.94485 0.94554 0.84414 0.85043 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 14 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 14 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 14 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 14 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 14 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 14 7 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 14 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 14 9 C 0.05 1.24 4.88 -29.03 -0.14 1.10 14 10 C -0.06 -1.34 5.08 -104.56 -0.53 -1.87 14 11 C -0.07 -1.27 9.42 -39.57 -0.37 -1.65 14 12 C -0.10 -1.63 6.22 -39.52 -0.25 -1.87 14 13 Br -0.07 -0.89 33.70 -68.01 -2.29 -3.18 14 14 C -0.09 -1.34 9.78 -39.57 -0.39 -1.72 14 15 C -0.15 -2.43 10.03 -39.52 -0.40 -2.82 14 16 C 0.11 2.18 7.24 -39.42 -0.29 1.89 14 17 F -0.13 -2.73 16.57 2.25 0.04 -2.70 14 18 H 0.26 7.24 8.31 -40.82 -0.34 6.90 14 19 H 0.04 1.01 7.79 -51.93 -0.40 0.60 14 20 H 0.04 0.94 8.05 -51.93 -0.42 0.53 14 21 H 0.14 2.48 8.06 -52.48 -0.42 2.05 14 22 H 0.13 1.53 8.06 -52.49 -0.42 1.11 14 23 H 0.13 1.71 8.06 -52.49 -0.42 1.29 14 LS Contribution 237.68 15.07 3.58 3.58 Total: -1.00 -28.66 237.68 -7.36 -36.02 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -1.63 Total: -4.86 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.77 Total: -19.96 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.29 Total: -3.18 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.66 -7.36 -36.02 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042302381.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.139 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds