Wall clock time and date at job start Mon Mar 30 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38216 * 120.00783 * 264.72404 * 10 9 7 12 12 C 1.38303 * 120.01490 * 179.77331 * 11 10 9 13 13 Br 1.89100 * 119.98272 * 180.27332 * 12 11 10 14 14 C 1.38345 * 120.03045 * 0.50061 * 12 11 10 15 15 C 1.38167 * 120.01934 * 359.75175 * 14 12 11 16 16 C 1.38436 * 120.00734 * 85.00002 * 10 9 7 17 17 F 1.35095 * 120.01847 * 359.97438 * 16 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08004 * 119.99138 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.99110 * 179.72932 * 14 12 11 23 23 H 1.08000 * 120.01017 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5957 -4.2416 -1.1913 12 6 3.4980 -5.2898 -1.1919 13 35 4.0033 -6.1007 -2.8237 14 6 4.0274 -5.7483 0.0012 15 6 3.6590 -5.1560 1.1938 16 6 2.7595 -4.1030 1.1948 17 9 2.3988 -3.5234 2.3605 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.1791 -3.8873 -2.1226 22 1 4.7286 -6.5697 0.0003 23 1 4.0720 -5.5143 2.1252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042302381.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:56 Heat of formation + Delta-G solvation = -49.325569 kcal Electronic energy + Delta-G solvation = -11577.693433 eV Core-core repulsion = 9157.368727 eV Total energy + Delta-G solvation = -2420.324707 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.81086 -40.06866 -35.63333 -33.46509 -32.82779 -30.11885 -28.96459 -25.49625 -23.61556 -22.13732 -18.67727 -18.44819 -17.52034 -16.82661 -16.51969 -16.17017 -15.17368 -14.53847 -14.35062 -14.31466 -13.78560 -13.56488 -13.09783 -12.77513 -12.47475 -12.25575 -11.80578 -11.63337 -11.43069 -11.21877 -10.65656 -9.90323 -9.43647 -8.25574 -6.38858 -0.03364 0.24731 0.58270 1.37774 1.38286 1.51588 2.34417 2.52824 3.06341 3.35208 3.74928 3.91158 4.20934 4.28521 4.64313 4.91963 5.02247 5.12783 5.14837 5.24247 5.60729 5.66684 5.80116 6.07949 6.71975 7.29884 8.84763 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.006663 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.507673 B = 4201.555397 C = 4785.302995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.058 3.942 10 C -0.096 4.096 11 C -0.076 4.076 12 C -0.102 4.102 13 Br -0.035 7.035 14 C -0.072 4.072 15 C -0.137 4.137 16 C 0.086 3.914 17 F -0.147 7.147 18 H 0.267 0.733 19 H 0.004 0.996 20 H 0.015 0.985 21 H 0.133 0.867 22 H 0.175 0.825 23 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.797 -13.979 -3.440 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.021 3.979 10 C -0.098 4.098 11 C -0.096 4.096 12 C -0.182 4.182 13 Br 0.050 6.950 14 C -0.091 4.091 15 C -0.156 4.156 16 C 0.066 3.934 17 F -0.126 7.126 18 H 0.076 0.924 19 H 0.023 0.977 20 H 0.034 0.966 21 H 0.151 0.849 22 H 0.192 0.808 23 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.823 -14.156 -4.016 17.692 hybrid contribution -0.382 1.452 0.595 1.616 sum 9.441 -12.704 -3.421 16.193 Atomic orbital electron populations 1.70074 1.07643 1.28057 1.50923 1.25912 0.95804 1.03140 0.94346 0.85380 0.78915 0.78611 0.78083 1.18913 1.19822 1.20171 1.21326 0.93000 0.91076 1.51500 0.92777 1.18025 0.92714 0.90584 0.96549 1.20489 0.99441 0.97342 0.92481 1.20884 0.96656 0.94427 0.97589 1.21885 1.02785 1.00180 0.93318 1.96650 1.91164 1.80016 1.27152 1.21183 0.99096 0.99984 0.88851 1.21383 0.97773 0.95306 1.01155 1.18060 0.98971 0.95443 0.80920 1.91447 1.90670 1.83986 1.46457 0.92413 0.97743 0.96641 0.84915 0.80766 0.81028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.74 14 2 C 0.01 0.38 5.46 84.66 0.46 0.84 14 3 Si 0.97 44.52 29.54 68.60 2.03 46.55 14 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 14 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 14 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 14 7 C -0.53 -30.57 9.09 25.60 0.23 -30.34 14 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 14 9 C 0.06 3.14 4.88 29.10 0.14 3.28 14 10 C -0.10 -4.17 5.08 -19.82 -0.10 -4.27 14 11 C -0.08 -2.80 9.42 22.28 0.21 -2.59 14 12 C -0.10 -3.02 6.22 22.31 0.14 -2.88 14 13 Br -0.04 -0.85 33.70 -20.37 -0.69 -1.54 14 14 C -0.07 -1.80 9.78 22.28 0.22 -1.58 14 15 C -0.14 -3.87 10.03 22.31 0.22 -3.65 14 16 C 0.09 3.35 7.24 22.38 0.16 3.51 14 17 F -0.15 -6.37 16.57 44.97 0.75 -5.62 14 18 H 0.27 15.04 8.31 -92.71 -0.77 14.27 14 19 H 0.00 0.25 7.79 -2.39 -0.02 0.23 14 20 H 0.02 0.86 8.05 -2.39 -0.02 0.84 14 21 H 0.13 4.89 8.06 -2.91 -0.02 4.86 14 22 H 0.17 2.97 8.06 -2.91 -0.02 2.94 14 23 H 0.17 3.58 8.06 -2.91 -0.02 3.55 14 Total: -1.00 -63.73 237.68 5.28 -58.45 By element: Atomic # 1 Polarization: -5.64 SS G_CDS: 1.22 Total: -4.42 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 1.69 Total: -37.68 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.74 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.75 Total: -5.62 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -0.69 Total: -1.54 kcal Total: -63.73 5.28 -58.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042302381.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.126 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds