Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38211 * 119.99036 * 264.72322 * 10 9 7 12 12 C 1.38441 * 119.98407 * 179.74661 * 11 10 9 13 13 F 1.35091 * 120.01723 * 180.27679 * 12 11 10 14 14 C 1.38483 * 119.96656 * 0.54986 * 12 11 10 15 15 C 1.38167 * 119.98121 * 359.70379 * 14 12 11 16 16 C 1.38303 * 119.99291 * 84.99551 * 10 9 7 17 17 Br 1.89101 * 119.98512 * 0.02562 * 16 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08004 * 120.00874 * 359.97438 * 11 10 9 22 22 H 1.07997 * 120.00992 * 179.68123 * 14 12 11 23 23 H 1.08004 * 119.99308 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5954 -4.2413 -1.1915 12 6 3.4991 -5.2902 -1.1918 13 9 3.8608 -5.8702 -2.3570 14 6 4.0277 -5.7482 0.0034 15 6 3.6576 -5.1541 1.1947 16 6 2.7589 -4.1023 1.1938 17 35 2.2521 -3.2908 2.8249 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.1788 -3.8870 -2.1228 22 1 4.7287 -6.5697 0.0044 23 1 4.0694 -5.5115 2.1270 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048772615.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -46.352189 kcal Electronic energy + Delta-G solvation = -11582.475344 eV Core-core repulsion = 9162.279573 eV Total energy + Delta-G solvation = -2420.195771 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.93717 -40.12931 -35.48070 -33.28504 -32.80867 -30.09713 -28.82290 -25.41999 -23.54089 -22.23097 -18.55127 -18.13182 -17.48956 -16.85634 -16.61736 -16.48043 -15.06211 -14.62632 -14.56971 -14.31679 -13.55615 -13.27542 -12.94008 -12.70286 -12.49723 -12.30858 -11.63404 -11.58309 -11.49079 -10.80695 -10.52057 -9.88017 -9.40318 -8.16793 -6.26073 -0.00955 0.27240 0.85548 1.40052 1.42065 1.53523 2.38923 2.56032 3.16122 3.22061 3.77291 3.91117 4.22286 4.31668 4.76017 4.91205 5.02639 5.07307 5.19174 5.38388 5.73062 5.76579 5.82559 6.16816 6.82556 7.40543 8.93812 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.010327 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.826085 B = 2710.641414 C = 3683.316924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.508 4.508 8 H 0.051 0.949 9 C 0.047 3.953 10 C -0.010 4.010 11 C -0.168 4.168 12 C 0.107 3.893 13 F -0.139 7.139 14 C -0.156 4.156 15 C -0.055 4.055 16 C -0.118 4.118 17 Br -0.048 7.048 18 H 0.264 0.736 19 H 0.031 0.969 20 H 0.007 0.993 21 H 0.132 0.868 22 H 0.176 0.824 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 -10.506 4.088 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.010 3.990 10 C -0.012 4.012 11 C -0.187 4.187 12 C 0.088 3.912 13 F -0.118 7.118 14 C -0.175 4.175 15 C -0.075 4.075 16 C -0.198 4.198 17 Br 0.038 6.962 18 H 0.073 0.927 19 H 0.049 0.951 20 H 0.025 0.975 21 H 0.150 0.850 22 H 0.193 0.807 23 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.022 -10.111 4.659 13.162 hybrid contribution 0.091 0.882 -0.780 1.181 sum 7.113 -9.229 3.879 12.281 Atomic orbital electron populations 1.70062 1.07384 1.27596 1.51527 1.25698 0.95574 1.02380 0.94859 0.85565 0.79165 0.79655 0.77749 1.19016 1.20481 1.20434 1.21089 0.92635 0.90478 1.50421 0.93053 1.18335 0.92862 0.90304 0.97463 1.20194 0.95370 0.94261 0.91406 1.21065 1.00899 0.97737 0.99035 1.17847 0.97217 0.94002 0.82151 1.91475 1.90368 1.83118 1.46848 1.21298 1.03363 1.03365 0.89512 1.21235 0.93953 0.92502 0.99803 1.21944 1.04675 1.01301 0.91866 1.96600 1.91891 1.82753 1.24940 0.92741 0.95060 0.97462 0.84963 0.80659 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 13.29 21.45 0.28 -54.06 14 2 C 0.01 0.74 5.46 84.66 0.46 1.20 14 3 Si 0.95 43.80 29.54 68.60 2.03 45.83 14 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 14 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 14 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 14 7 C -0.51 -27.80 9.06 25.60 0.23 -27.57 14 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 14 9 C 0.05 2.42 4.55 29.10 0.13 2.55 14 10 C -0.01 -0.44 5.07 -19.85 -0.10 -0.54 14 11 C -0.17 -6.29 9.66 22.31 0.22 -6.07 14 12 C 0.11 3.35 7.30 22.38 0.16 3.51 14 13 F -0.14 -4.16 17.27 44.97 0.78 -3.39 14 14 C -0.16 -3.98 10.03 22.31 0.22 -3.76 14 15 C -0.06 -1.52 9.78 22.28 0.22 -1.31 14 16 C -0.12 -4.30 6.22 22.31 0.14 -4.17 14 17 Br -0.05 -1.74 31.85 -20.37 -0.65 -2.39 14 18 H 0.26 14.61 8.31 -92.71 -0.77 13.84 14 19 H 0.03 1.68 6.89 -2.39 -0.02 1.67 14 20 H 0.01 0.39 8.05 -2.39 -0.02 0.37 14 21 H 0.13 4.96 8.06 -2.91 -0.02 4.94 14 22 H 0.18 3.04 8.06 -2.91 -0.02 3.02 14 23 H 0.17 3.44 8.06 -2.91 -0.02 3.42 14 Total: -1.00 -60.26 235.54 5.35 -54.92 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: 1.22 Total: -4.77 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 1.68 Total: -36.14 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.28 Total: -54.06 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 35 Polarization: -1.74 SS G_CDS: -0.65 Total: -2.39 kcal Total: -60.26 5.35 -54.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048772615.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.564 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds