Wall clock time and date at job start Mon Mar 30 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99593 * 2 1 4 4 H 1.48499 * 109.47264 * 270.00289 * 3 2 1 5 5 H 1.48504 * 109.47175 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46829 * 150.00303 * 3 2 1 7 7 C 1.37872 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99893 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47334 * 179.97438 * 9 7 2 11 11 O 1.20832 * 119.99613 * 0.02562 * 10 9 7 12 12 O 1.34244 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.35977 * 116.99784 * 185.51225 * 12 10 9 14 14 C 1.38704 * 120.03347 * 261.65209 * 13 12 10 15 15 C 1.38139 * 119.97905 * 179.72713 * 14 13 12 16 16 C 1.38482 * 120.05668 * 0.56659 * 15 14 13 17 17 F 1.35094 * 119.97184 * 179.72618 * 16 15 14 18 18 C 1.38443 * 120.06454 * 359.70234 * 16 15 14 19 19 C 1.38255 * 120.02003 * 0.02562 * 18 16 15 20 20 Cl 1.73592 * 120.02738 * 179.97438 * 19 18 16 21 21 H 0.96994 * 120.00679 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47275 * 59.99950 * 9 7 2 23 23 H 1.09006 * 109.47144 * 299.99789 * 9 7 2 24 24 H 1.07994 * 120.00749 * 359.97438 * 14 13 12 25 25 H 1.07998 * 119.97235 * 180.29703 * 15 14 13 26 26 H 1.08004 * 119.98989 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0010 11 8 3.2288 -3.5331 -0.0010 12 8 5.3338 -2.8599 -0.0020 13 6 5.7204 -4.1584 -0.1182 14 6 6.0650 -4.8840 1.0126 15 6 6.4521 -6.2047 0.8938 16 6 6.5078 -6.8016 -0.3545 17 9 6.8919 -8.0916 -0.4692 18 6 6.1696 -6.0776 -1.4851 19 6 5.7764 -4.7573 -1.3691 20 17 5.3530 -3.8492 -2.7867 21 1 -0.4851 0.8399 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6799 -0.8912 24 1 6.0268 -4.4177 1.9859 25 1 6.7158 -6.7710 1.7748 26 1 6.2131 -6.5445 -2.4581 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049820956.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:45 Heat of formation + Delta-G solvation = -103.157905 kcal Electronic energy + Delta-G solvation = -16321.608863 eV Core-core repulsion = 13113.377497 eV Total energy + Delta-G solvation = -3208.231366 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.14866 -40.91847 -38.54868 -36.54480 -36.22801 -33.06254 -31.27614 -30.46173 -29.36758 -24.53306 -23.48848 -22.54941 -20.49307 -18.18968 -17.71585 -17.29569 -16.91893 -16.12062 -15.76397 -15.18264 -15.01233 -14.49332 -14.14837 -13.79340 -13.61217 -13.32079 -12.72507 -12.23008 -12.17426 -11.63801 -11.43911 -11.19141 -11.00605 -10.74121 -10.59502 -10.21615 -9.72383 -9.44544 -9.21903 -8.71593 -8.64714 -6.17358 -4.20803 0.66275 0.80347 1.92307 2.82727 2.95812 3.21171 3.28252 3.29286 3.52465 3.99079 4.29360 4.41634 4.64624 4.89451 4.98915 5.12985 5.35052 5.60628 5.78701 5.89801 5.96752 6.38937 6.47850 6.68557 6.92796 7.36603 8.31350 8.53754 8.97543 9.37568 10.94706 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.036958 B = 0.005383 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.430049 B = 5200.524531 C = 5435.654884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.005 3.995 10 C 0.467 3.533 11 O -0.478 6.478 12 O -0.304 6.304 13 C 0.101 3.899 14 C -0.083 4.083 15 C -0.135 4.135 16 C 0.105 3.895 17 F -0.133 7.133 18 C -0.135 4.135 19 C -0.021 4.021 20 Cl -0.036 7.036 21 H 0.268 0.732 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.431 -9.336 -0.671 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.112 0.888 9 C -0.033 4.033 10 C 0.311 3.689 11 O -0.360 6.360 12 O -0.221 6.221 13 C 0.058 3.942 14 C -0.101 4.101 15 C -0.154 4.154 16 C 0.085 3.915 17 F -0.111 7.111 18 C -0.154 4.154 19 C -0.048 4.048 20 Cl -0.007 7.007 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.169 0.831 25 H 0.166 0.834 26 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 14.953 -9.483 -0.792 17.724 hybrid contribution 0.370 0.649 -0.221 0.779 sum 15.323 -8.834 -1.012 17.716 Atomic orbital electron populations 1.69865 1.06169 1.27238 1.49394 1.24879 0.94819 0.98747 0.94247 0.86920 0.80489 0.83831 0.78984 1.19778 1.20783 1.18693 1.20919 0.86792 0.96172 1.52677 0.88768 1.19564 0.98888 0.84538 1.00288 1.25199 0.77490 0.94948 0.71226 1.90600 1.55075 1.46883 1.43462 1.84810 1.29447 1.23294 1.84583 1.18381 0.99437 0.85222 0.91197 1.21095 0.97858 0.92782 0.98411 1.21080 1.02343 0.95213 0.96741 1.17409 1.00951 0.79266 0.93863 1.91520 1.88573 1.34182 1.96846 1.20844 1.02556 0.92487 0.99554 1.20984 1.02290 0.92798 0.88770 1.98416 1.91325 1.73629 1.37299 0.92228 0.91985 0.92342 0.83120 0.83408 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.96 55.43 0.77 -25.93 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 15 3 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.26 -5.63 6.54 56.52 0.37 -5.26 15 7 C -0.53 -14.86 9.48 -34.44 -0.33 -15.19 15 8 H 0.09 2.99 7.00 -52.49 -0.37 2.62 15 9 C 0.00 0.11 4.64 -29.03 -0.13 -0.03 15 10 C 0.47 10.21 7.46 36.01 0.27 10.48 15 11 O -0.48 -11.76 15.21 -18.75 -0.29 -12.04 15 12 O -0.30 -5.60 9.56 -23.73 -0.23 -5.82 15 13 C 0.10 1.63 4.94 -39.20 -0.19 1.44 15 14 C -0.08 -1.08 9.98 -39.45 -0.39 -1.47 15 15 C -0.13 -1.49 10.02 -39.53 -0.40 -1.89 15 16 C 0.10 1.25 7.30 -39.42 -0.29 0.96 15 17 F -0.13 -1.53 17.26 2.25 0.04 -1.49 15 18 C -0.13 -1.71 9.80 -39.50 -0.39 -2.09 15 19 C -0.02 -0.32 6.31 -39.37 -0.25 -0.57 15 20 Cl -0.04 -0.57 28.15 -51.86 -1.46 -2.03 15 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 22 H 0.06 1.34 7.20 -51.93 -0.37 0.97 15 23 H 0.06 1.27 7.57 -51.93 -0.39 0.88 15 24 H 0.15 1.66 8.06 -52.49 -0.42 1.23 15 25 H 0.15 1.18 8.06 -52.49 -0.42 0.76 15 26 H 0.15 1.57 8.06 -52.48 -0.42 1.15 15 LS Contribution 262.01 15.07 3.95 3.95 Total: -1.00 -31.00 262.01 -5.65 -36.64 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -1.57 Total: -2.41 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.20 Total: -6.32 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.51 Total: -17.87 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.46 Total: -2.03 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.00 -5.65 -36.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049820956.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.514 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds