Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 120.00169 * 2 1 4 4 H 1.48496 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46874 * 300.00176 * 3 2 1 6 6 H 1.48498 * 109.46924 * 59.99799 * 3 2 1 7 7 C 1.38723 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00201 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.76199 * 99.99967 * 185.11673 * 9 7 2 11 11 C 1.39264 * 120.00153 * 265.49334 * 10 9 7 12 12 C 1.38083 * 120.23694 * 180.02562 * 11 10 9 13 13 C 1.38233 * 120.24004 * 0.02562 * 12 11 10 14 14 Cl 1.73594 * 120.00547 * 179.97438 * 13 12 11 15 15 C 1.39815 * 119.99508 * 359.97438 * 13 12 11 16 16 C 1.47660 * 120.11968 * 179.97438 * 15 13 12 17 17 O 1.21478 * 119.99918 * 359.72683 * 16 15 13 18 18 O 1.34722 * 119.99927 * 179.97438 * 16 15 13 19 19 C 1.38784 * 119.99846 * 85.75879 * 10 9 7 20 20 H 0.96998 * 119.99412 * 0.02562 * 1 2 3 21 21 H 1.07993 * 119.87914 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.87944 * 179.97438 * 12 11 10 23 23 H 0.96698 * 116.99617 * 180.02562 * 18 16 15 24 24 H 1.07996 * 120.11891 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0100 -1.2014 -0.0005 8 1 3.0899 -1.2014 -0.0010 9 16 1.1289 -2.7272 -0.0019 10 6 2.4726 -3.8565 0.1526 11 6 3.0360 -4.4283 -0.9854 12 6 4.0888 -5.3143 -0.8699 13 6 4.5907 -5.6405 0.3761 14 17 5.9139 -6.7556 0.5143 15 6 4.0324 -5.0723 1.5252 16 6 4.5660 -5.4193 2.8576 17 8 5.4884 -6.2036 2.9571 18 8 4.0266 -4.8700 3.9631 19 6 2.9657 -4.1805 1.4088 20 1 -0.4849 0.8401 -0.0004 21 1 2.6477 -4.1784 -1.9616 22 1 4.5212 -5.7546 -1.7562 23 1 4.4098 -5.1273 4.8128 24 1 2.5277 -3.7412 2.2928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075442300.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = -91.598480 kcal Electronic energy + Delta-G solvation = -14076.487738 eV Core-core repulsion = 11299.137708 eV Total energy + Delta-G solvation = -2777.350030 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 257.990 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44784 -39.66970 -37.55677 -37.03202 -34.62869 -32.66201 -31.81944 -27.71653 -25.84635 -23.98344 -22.52313 -19.94424 -19.18351 -18.68751 -17.36013 -16.90439 -16.73830 -16.64907 -16.35843 -15.18934 -14.92218 -14.47992 -14.31163 -13.61635 -13.37897 -12.98095 -12.89609 -12.74579 -12.62075 -12.56162 -12.42957 -11.72547 -11.22018 -11.11313 -10.74373 -10.26242 -9.68187 -8.79767 -8.37894 -6.17683 -0.57237 -0.03051 0.92785 1.29416 1.39257 1.41299 1.49950 1.63772 1.98387 2.22272 2.48553 2.96369 3.40300 3.57860 3.93551 4.03925 4.20639 4.41829 4.71649 4.76128 4.95110 5.29099 5.42448 5.46714 5.51544 6.18740 6.93858 7.04168 8.68968 Molecular weight = 257.99amu Principal moments of inertia in cm(-1) A = 0.027893 B = 0.005898 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.581062 B = 4746.223925 C = 5044.896984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.071 0.929 9 S -0.069 6.069 10 C -0.130 4.130 11 C -0.032 4.032 12 C -0.118 4.118 13 C 0.018 3.982 14 Cl -0.033 7.033 15 C -0.146 4.146 16 C 0.531 3.469 17 O -0.517 6.517 18 O -0.505 6.505 19 C -0.015 4.015 20 H 0.274 0.726 21 H 0.156 0.844 22 H 0.177 0.823 23 H 0.434 0.566 24 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.584 -9.491 1.765 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.089 0.911 9 S 0.165 5.835 10 C -0.241 4.241 11 C -0.053 4.053 12 C -0.138 4.138 13 C -0.010 4.010 14 Cl -0.003 7.003 15 C -0.150 4.150 16 C 0.375 3.625 17 O -0.408 6.408 18 O -0.319 6.319 19 C -0.037 4.037 20 H 0.083 0.917 21 H 0.174 0.826 22 H 0.194 0.806 23 H 0.297 0.703 24 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.436 -9.744 1.367 12.333 hybrid contribution 1.794 0.948 0.806 2.183 sum 9.230 -8.795 2.173 12.934 Atomic orbital electron populations 1.70097 1.07402 1.28773 1.47794 1.25924 0.95962 1.02667 0.93678 0.85043 0.78404 0.77073 0.78368 1.19045 1.19563 1.19749 1.23130 0.94856 0.91528 1.58940 0.91076 1.83614 1.06785 0.97749 1.95331 1.22713 1.03228 1.02712 0.95450 1.22144 0.92225 0.91822 0.99102 1.21341 0.97130 0.99044 0.96314 1.21217 0.91819 0.94046 0.93913 1.98395 1.44448 1.59221 1.98277 1.18993 1.01132 1.04366 0.90474 1.20519 0.79553 0.77161 0.85227 1.90936 1.28365 1.33752 1.87699 1.84569 1.61643 1.67346 1.18383 1.22006 0.91713 0.91808 0.98139 0.91678 0.82605 0.80599 0.70326 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.32 13.22 21.64 0.29 -51.03 14 2 C 0.02 1.25 5.49 84.84 0.47 1.72 14 3 Si 0.99 42.02 29.55 68.60 2.03 44.05 14 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 14 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 14 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 14 7 C -0.54 -29.00 9.46 67.94 0.64 -28.36 14 8 H 0.07 3.80 7.79 -2.91 -0.02 3.78 14 9 S -0.07 -3.42 21.40 -56.49 -1.21 -4.62 14 10 C -0.13 -5.09 5.45 22.65 0.12 -4.97 14 11 C -0.03 -1.03 9.79 22.48 0.22 -0.81 14 12 C -0.12 -3.15 9.80 22.23 0.22 -2.93 14 13 C 0.02 0.52 6.36 22.65 0.14 0.67 14 14 Cl -0.03 -0.90 26.01 -2.72 -0.07 -0.97 14 15 C -0.15 -4.71 5.87 -20.10 -0.12 -4.83 14 16 C 0.53 15.74 8.26 70.31 0.58 16.32 14 17 O -0.52 -16.43 14.74 19.91 0.29 -16.14 14 18 O -0.51 -12.06 12.68 -56.32 -0.71 -12.77 14 19 C -0.02 -0.56 9.36 22.71 0.21 -0.35 14 20 H 0.27 14.44 8.31 -92.71 -0.77 13.67 14 21 H 0.16 4.55 8.06 -2.91 -0.02 4.52 14 22 H 0.18 3.37 8.06 -2.91 -0.02 3.35 14 23 H 0.43 5.54 9.11 -74.06 -0.67 4.87 14 24 H 0.14 5.28 7.61 -2.91 -0.02 5.25 14 Total: -1.00 -64.44 257.71 3.69 -60.76 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 0.58 Total: 4.26 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 2.49 Total: -23.53 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.29 Total: -51.03 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.42 Total: -28.91 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.21 Total: -4.62 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.97 kcal Total: -64.44 3.69 -60.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075442300.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.840 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds