Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81400 * 109.47303 * 2 1 4 4 C 1.81394 * 103.00471 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47788 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47671 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47373 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00240 * 270.00099 * 7 6 5 9 9 H 1.07997 * 120.00637 * 142.01152 * 8 7 6 10 10 C 1.38820 * 119.99728 * 322.00793 * 8 7 6 11 11 N 1.31617 * 120.00002 * 156.08926 * 10 8 7 12 12 Si 1.86802 * 120.00010 * 336.09427 * 10 8 7 13 13 H 1.48507 * 109.46917 * 95.28647 * 12 10 8 14 14 H 1.48496 * 109.46914 * 215.28529 * 12 10 8 15 15 H 1.48502 * 109.47090 * 335.29092 * 12 10 8 16 16 C 1.46507 * 120.00087 * 89.99706 * 7 6 5 17 17 C 1.54266 * 110.03254 * 242.57987 * 16 7 6 18 18 C 1.54962 * 104.16081 * 217.13647 * 17 16 7 19 19 C 1.54889 * 102.77997 * 37.88795 * 18 17 16 20 20 C 1.53870 * 110.03320 * 125.36281 * 16 7 6 21 21 H 1.08994 * 109.46886 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46941 * 300.00184 * 1 2 3 23 23 H 1.09001 * 109.47260 * 59.99657 * 1 2 3 24 24 H 1.09005 * 109.47018 * 240.00515 * 2 1 3 25 25 H 1.08996 * 109.47429 * 119.99910 * 2 1 3 26 26 H 1.09005 * 109.47336 * 59.99590 * 4 3 2 27 27 H 1.09005 * 109.46772 * 300.00266 * 4 3 2 28 28 H 1.09005 * 109.47220 * 59.99270 * 5 4 3 29 29 H 1.08999 * 109.47126 * 300.00294 * 5 4 3 30 30 H 1.08992 * 109.47577 * 59.99651 * 6 5 4 31 31 H 1.09005 * 109.46754 * 299.99935 * 6 5 4 32 32 H 0.96997 * 119.99896 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.01725 * 3.97135 * 16 7 6 34 34 H 1.08997 * 110.48506 * 335.78556 * 17 16 7 35 35 H 1.09006 * 110.48623 * 98.42714 * 17 16 7 36 36 H 1.09001 * 110.72050 * 279.57458 * 18 17 16 37 37 H 1.09003 * 110.92406 * 156.29988 * 18 17 16 38 38 H 1.08997 * 110.48998 * 203.40959 * 19 18 17 39 39 H 1.09000 * 110.59508 * 80.81413 * 19 18 17 40 40 H 1.09002 * 110.03461 * 238.57223 * 20 16 7 41 41 H 1.09004 * 110.03262 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.6065 2.8816 -0.0002 6 6 6.1267 2.7092 -0.0015 7 7 6.7676 4.0266 -0.0016 8 6 7.0661 4.6427 -1.1875 9 1 6.9458 5.7114 -1.2862 10 6 7.5236 3.8936 -2.2630 11 7 7.3693 4.3423 -3.4906 12 14 8.3580 2.2486 -1.9678 13 1 7.3593 1.1569 -2.0958 14 1 9.4359 2.0534 -2.9703 15 1 8.9418 2.2276 -0.6025 16 6 7.0890 4.6849 1.2671 17 6 6.3007 6.0051 1.3921 18 6 7.2903 6.9731 2.0885 19 6 8.6490 6.5920 1.4499 20 6 8.5814 5.0577 1.3042 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 4.2399 0.9544 -0.8910 27 1 4.2406 0.9542 0.8890 28 1 4.3037 3.4327 0.8902 29 1 4.3031 3.4337 -0.8897 30 1 6.4292 2.1584 -0.8921 31 1 6.4304 2.1570 0.8878 32 1 7.6886 3.8187 -4.2421 33 1 6.8480 4.0258 2.1011 34 1 6.0290 6.3818 0.4061 35 1 5.4110 5.8615 2.0053 36 1 7.3070 6.7993 3.1645 37 1 7.0384 8.0109 1.8703 38 1 9.4720 6.8771 2.1053 39 1 8.7593 7.0634 0.4733 40 1 9.0646 4.5801 2.1567 41 1 9.0667 4.7484 0.3785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075752083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = -4.461318 kcal Electronic energy + Delta-G solvation = -17722.709614 eV Core-core repulsion = 15149.480010 eV Total energy + Delta-G solvation = -2573.229604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.96981 -35.17285 -32.82868 -32.55758 -31.07320 -27.90645 -27.18145 -25.81602 -23.72697 -22.49194 -20.94719 -19.94748 -18.91494 -16.58306 -15.92720 -15.57569 -15.31628 -14.96638 -14.46281 -14.27617 -14.19977 -13.40857 -13.10683 -12.66439 -12.57418 -12.36666 -12.23548 -11.66958 -11.53759 -11.37860 -11.16469 -10.88973 -10.71347 -10.44900 -10.43382 -10.36518 -10.22048 -9.95844 -9.76083 -9.74865 -9.61580 -9.40987 -8.45877 -7.49559 -6.76123 -5.98905 -3.37931 1.82577 2.80807 3.29024 3.46232 3.51344 4.52758 4.84769 4.87430 4.91593 5.25932 5.28801 5.29984 5.36335 5.41971 5.53791 5.59835 5.67628 5.69275 5.91415 5.95970 5.99025 6.07071 6.20013 6.22027 6.27030 6.36045 6.40851 6.46004 6.55678 6.58851 6.75728 6.81116 6.95914 7.02648 7.15143 7.20979 8.08771 8.44251 9.03728 9.74488 10.16069 11.16765 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.006147 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.503800 B = 4553.887868 C = 5557.451883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 S -0.274 6.274 4 C -0.076 4.076 5 C -0.117 4.117 6 C 0.144 3.856 7 N -0.597 5.597 8 C -0.257 4.257 9 H 0.080 0.920 10 C 0.038 3.962 11 N -0.896 5.896 12 Si 0.869 3.131 13 H -0.288 1.288 14 H -0.302 1.302 15 H -0.268 1.268 16 C 0.172 3.828 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.133 4.133 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -5.266 9.806 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.242 4.242 3 S -0.047 6.047 4 C -0.225 4.225 5 C -0.158 4.158 6 C 0.016 3.984 7 N -0.318 5.318 8 C -0.386 4.386 9 H 0.098 0.902 10 C -0.162 4.162 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.216 1.216 14 H -0.230 1.230 15 H -0.193 1.193 16 C 0.066 3.934 17 C -0.174 4.174 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.172 4.172 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.983 -4.374 9.616 12.664 hybrid contribution 1.221 -2.174 -0.040 2.494 sum -5.762 -6.548 9.576 12.953 Atomic orbital electron populations 1.21493 0.92565 1.02072 1.03136 1.23263 0.99955 0.96495 1.04475 1.86985 1.07822 1.11845 1.98086 1.23471 0.91534 1.03386 1.04089 1.21991 0.97720 0.92774 1.03355 1.21182 0.89758 0.88298 0.99133 1.44280 1.67004 1.18336 1.02183 1.18614 1.38975 0.94197 0.86795 0.90248 1.25471 0.98065 0.97481 0.95216 1.69890 1.46562 1.39449 0.97833 0.87058 0.79887 0.85264 0.77908 1.21614 1.23044 1.19300 1.21059 0.92141 0.92581 0.87665 1.22840 0.97021 0.96742 1.00775 1.22432 0.96252 0.98681 0.98675 1.22241 0.96132 0.96928 1.00165 1.22534 0.98485 0.94789 1.01427 0.91548 0.91826 0.91710 0.90411 0.90549 0.90486 0.90836 0.91977 0.90296 0.92778 0.94469 0.92799 0.93153 0.90330 0.93362 0.92726 0.92704 0.93318 0.91607 0.93852 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.92 37.16 0.37 -0.92 16 2 C -0.09 -1.07 6.66 37.16 0.25 -0.83 16 3 S -0.27 -4.18 21.74 -107.50 -2.34 -6.52 16 4 C -0.08 -1.22 5.94 37.15 0.22 -1.00 16 5 C -0.12 -2.21 5.54 -26.74 -0.15 -2.36 16 6 C 0.14 3.01 4.51 -4.05 -0.02 2.99 16 7 N -0.60 -13.54 2.02 -164.40 -0.33 -13.87 16 8 C -0.26 -6.83 8.19 -15.06 -0.12 -6.96 16 9 H 0.08 2.31 7.09 -52.49 -0.37 1.94 16 10 C 0.04 1.07 5.27 -17.43 -0.09 0.98 16 11 N -0.90 -26.83 13.97 55.49 0.78 -26.05 16 12 Si 0.87 21.68 25.19 -169.99 -4.28 17.40 16 13 H -0.29 -7.00 6.65 56.52 0.38 -6.62 16 14 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.17 3.37 3.42 -66.81 -0.23 3.14 16 17 C -0.13 -2.44 6.43 -25.03 -0.16 -2.60 16 18 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 19 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 20 C -0.13 -2.52 6.24 -25.61 -0.16 -2.68 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 27 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 30 H 0.05 1.25 3.44 -51.93 -0.18 1.07 16 31 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.91 7.81 -51.93 -0.41 0.51 16 34 H 0.08 1.64 6.65 -51.93 -0.35 1.30 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.77 7.17 -51.93 -0.37 1.40 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -28.50 330.16 -9.22 -37.73 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.59 Total: 0.79 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.44 Total: -14.45 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.44 Total: -39.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.28 Total: 17.40 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.34 Total: -6.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.50 -9.22 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075752083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.266 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds