Wall clock time and date at job start Mon Mar 30 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81400 * 109.47303 * 2 1 4 4 C 1.81394 * 103.00471 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47788 * 180.02562 * 4 3 2 6 6 C 1.52991 * 109.47671 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47373 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00240 * 270.00099 * 7 6 5 9 9 H 1.07997 * 120.00637 * 142.01152 * 8 7 6 10 10 C 1.38820 * 119.99728 * 322.00793 * 8 7 6 11 11 N 1.31617 * 120.00002 * 156.08926 * 10 8 7 12 12 Si 1.86802 * 120.00010 * 336.09427 * 10 8 7 13 13 H 1.48507 * 109.46917 * 95.28647 * 12 10 8 14 14 H 1.48496 * 109.46914 * 215.28529 * 12 10 8 15 15 H 1.48502 * 109.47090 * 335.29092 * 12 10 8 16 16 C 1.46507 * 120.00087 * 89.99706 * 7 6 5 17 17 C 1.54266 * 110.03254 * 242.57987 * 16 7 6 18 18 C 1.54962 * 104.16081 * 217.13647 * 17 16 7 19 19 C 1.54889 * 102.77997 * 37.88795 * 18 17 16 20 20 C 1.53870 * 110.03320 * 125.36281 * 16 7 6 21 21 H 1.08994 * 109.46886 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46941 * 300.00184 * 1 2 3 23 23 H 1.09001 * 109.47260 * 59.99657 * 1 2 3 24 24 H 1.09005 * 109.47018 * 240.00515 * 2 1 3 25 25 H 1.08996 * 109.47429 * 119.99910 * 2 1 3 26 26 H 1.09005 * 109.47336 * 59.99590 * 4 3 2 27 27 H 1.09005 * 109.46772 * 300.00266 * 4 3 2 28 28 H 1.09005 * 109.47220 * 59.99270 * 5 4 3 29 29 H 1.08999 * 109.47126 * 300.00294 * 5 4 3 30 30 H 1.08992 * 109.47577 * 59.99651 * 6 5 4 31 31 H 1.09005 * 109.46754 * 299.99935 * 6 5 4 32 32 H 0.96997 * 119.99896 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.01725 * 3.97135 * 16 7 6 34 34 H 1.08997 * 110.48506 * 335.78556 * 17 16 7 35 35 H 1.09006 * 110.48623 * 98.42714 * 17 16 7 36 36 H 1.09001 * 110.72050 * 279.57458 * 18 17 16 37 37 H 1.09003 * 110.92406 * 156.29988 * 18 17 16 38 38 H 1.08997 * 110.48998 * 203.40959 * 19 18 17 39 39 H 1.09000 * 110.59508 * 80.81413 * 19 18 17 40 40 H 1.09002 * 110.03461 * 238.57223 * 20 16 7 41 41 H 1.09004 * 110.03262 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.6065 2.8816 -0.0002 6 6 6.1267 2.7092 -0.0015 7 7 6.7676 4.0266 -0.0016 8 6 7.0661 4.6427 -1.1875 9 1 6.9458 5.7114 -1.2862 10 6 7.5236 3.8936 -2.2630 11 7 7.3693 4.3423 -3.4906 12 14 8.3580 2.2486 -1.9678 13 1 7.3593 1.1569 -2.0958 14 1 9.4359 2.0534 -2.9703 15 1 8.9418 2.2276 -0.6025 16 6 7.0890 4.6849 1.2671 17 6 6.3007 6.0051 1.3921 18 6 7.2903 6.9731 2.0885 19 6 8.6490 6.5920 1.4499 20 6 8.5814 5.0577 1.3042 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 4.2399 0.9544 -0.8910 27 1 4.2406 0.9542 0.8890 28 1 4.3037 3.4327 0.8902 29 1 4.3031 3.4337 -0.8897 30 1 6.4292 2.1584 -0.8921 31 1 6.4304 2.1570 0.8878 32 1 7.6886 3.8187 -4.2421 33 1 6.8480 4.0258 2.1011 34 1 6.0290 6.3818 0.4061 35 1 5.4110 5.8615 2.0053 36 1 7.3070 6.7993 3.1645 37 1 7.0384 8.0109 1.8703 38 1 9.4720 6.8771 2.1053 39 1 8.7593 7.0634 0.4733 40 1 9.0646 4.5801 2.1567 41 1 9.0667 4.7484 0.3785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075752083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:34 Heat of formation + Delta-G solvation = -18.896558 kcal Electronic energy + Delta-G solvation = -17723.335573 eV Core-core repulsion = 15149.480010 eV Total energy + Delta-G solvation = -2573.855563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56179 -36.75799 -34.38732 -33.65537 -32.89747 -29.35444 -28.69406 -27.58657 -24.90292 -24.01302 -22.48300 -21.33109 -20.60163 -18.44241 -17.31134 -17.21455 -16.83706 -16.20390 -15.87619 -15.61179 -15.42571 -15.00846 -14.71074 -14.16477 -14.09406 -13.96769 -13.43052 -13.20023 -12.82427 -12.75542 -12.58108 -12.46499 -12.25961 -12.04959 -11.81911 -11.76069 -11.70640 -11.67602 -11.37780 -11.23839 -11.15379 -10.88883 -10.53881 -8.69700 -8.65616 -8.15365 -5.50243 0.70324 1.28525 1.40858 1.51547 1.68689 2.44688 3.06024 3.34513 3.93204 3.95072 4.00470 4.02475 4.07006 4.12864 4.28826 4.41800 4.50878 4.52458 4.66613 4.70755 4.73491 4.76540 4.85473 4.90956 4.92373 4.94191 4.97113 5.16057 5.21144 5.21812 5.22922 5.30879 5.39489 5.56900 5.62828 5.66473 6.02416 6.28237 7.07792 7.72417 8.13326 9.05047 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.006147 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.503800 B = 4553.887868 C = 5557.451883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 S -0.319 6.319 4 C -0.067 4.067 5 C -0.102 4.102 6 C 0.138 3.862 7 N -0.608 5.608 8 C -0.230 4.230 9 H 0.039 0.961 10 C -0.020 4.020 11 N -0.950 5.950 12 Si 0.931 3.069 13 H -0.276 1.276 14 H -0.314 1.314 15 H -0.255 1.255 16 C 0.163 3.837 17 C -0.132 4.132 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.134 4.134 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.259 0.741 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 -7.155 13.011 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.228 4.228 3 S -0.093 6.093 4 C -0.216 4.216 5 C -0.143 4.143 6 C 0.012 3.988 7 N -0.330 5.330 8 C -0.360 4.360 9 H 0.057 0.943 10 C -0.216 4.216 11 N -0.595 5.595 12 Si 0.761 3.239 13 H -0.204 1.204 14 H -0.243 1.243 15 H -0.179 1.179 16 C 0.057 3.943 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.173 4.173 21 H 0.112 0.888 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.400 -6.271 12.872 16.117 hybrid contribution 1.236 -1.538 -0.974 2.200 sum -6.164 -7.809 11.898 15.509 Atomic orbital electron populations 1.21519 0.91116 1.03657 1.02770 1.23380 1.00961 0.92964 1.05540 1.87148 1.07574 1.16409 1.98213 1.23287 0.91837 1.01386 1.05047 1.21697 0.96718 0.94287 1.01601 1.21272 0.90796 0.87265 0.99517 1.44400 1.67598 1.18920 1.02039 1.18373 1.36720 0.92608 0.88294 0.94324 1.26018 0.99424 1.01296 0.94871 1.70023 1.49154 1.41533 0.98768 0.86028 0.78520 0.81622 0.77766 1.20357 1.24339 1.17939 1.21353 0.92852 0.93343 0.86729 1.22750 0.98329 0.96789 0.99285 1.22403 0.94148 0.98406 0.99950 1.22223 0.98150 0.95362 0.99599 1.22514 0.97747 0.96418 1.00587 0.88820 0.91841 0.92493 0.89927 0.88844 0.91077 0.88208 0.91372 0.94362 0.94923 0.91224 0.93188 0.90438 0.94402 0.91706 0.89628 0.91877 0.90377 0.94410 0.91060 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.92 71.98 0.71 -1.47 16 2 C -0.08 -1.63 6.66 71.98 0.48 -1.15 16 3 S -0.32 -9.36 21.74 -56.49 -1.23 -10.59 16 4 C -0.07 -2.03 5.94 71.98 0.43 -1.60 16 5 C -0.10 -3.79 5.54 30.59 0.17 -3.62 16 6 C 0.14 5.59 4.51 86.38 0.39 5.98 16 7 N -0.61 -27.50 2.02 -674.03 -1.36 -28.86 16 8 C -0.23 -12.73 8.19 84.04 0.69 -12.04 16 9 H 0.04 2.43 7.09 -2.91 -0.02 2.41 16 10 C -0.02 -1.18 5.27 84.86 0.45 -0.73 16 11 N -0.95 -59.84 13.97 21.65 0.30 -59.53 16 12 Si 0.93 45.81 25.19 68.60 1.73 47.54 16 13 H -0.28 -12.91 6.65 99.48 0.66 -12.25 16 14 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 15 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.16 6.08 3.42 45.71 0.16 6.23 16 17 C -0.13 -4.66 6.43 31.69 0.20 -4.45 16 18 C -0.11 -3.20 6.91 31.91 0.22 -2.98 16 19 C -0.12 -3.70 6.83 31.67 0.22 -3.48 16 20 C -0.13 -4.83 6.24 31.32 0.20 -4.63 16 21 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.42 8.14 -2.38 -0.02 2.41 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.47 3.44 -2.39 -0.01 1.46 16 31 H 0.07 2.37 7.91 -2.38 -0.02 2.36 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.08 2.50 7.81 -2.39 -0.02 2.48 16 34 H 0.04 1.63 6.65 -2.39 -0.02 1.61 16 35 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.04 1.84 7.17 -2.39 -0.02 1.82 16 Total: -1.00 -65.38 330.16 4.66 -60.72 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.91 Total: 14.66 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 4.31 Total: -23.94 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -1.06 Total: -88.39 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.73 Total: 47.54 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.23 Total: -10.59 kcal Total: -65.38 4.66 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075752083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.822 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds