Wall clock time and date at job start Mon Mar 30 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38500 * 119.88659 * 2 1 4 4 C 1.38780 * 120.52979 * 180.02562 * 3 2 1 5 5 Br 1.89105 * 119.84614 * 180.02562 * 4 3 2 6 6 C 1.37654 * 120.30534 * 0.02562 * 4 3 2 7 7 C 1.40695 * 119.75812 * 0.02562 * 6 4 3 8 8 C 1.41296 * 120.25682 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00568 * 154.90669 * 8 7 6 10 10 C 1.39940 * 119.99784 * 334.90457 * 8 7 6 11 11 N 1.30846 * 119.99991 * 342.63194 * 10 8 7 12 12 Si 1.86799 * 119.99865 * 162.62703 * 10 8 7 13 13 H 1.48498 * 109.47322 * 89.99979 * 12 10 8 14 14 H 1.48502 * 109.47306 * 210.00352 * 12 10 8 15 15 H 1.48502 * 109.47195 * 330.00275 * 12 10 8 16 16 C 1.37939 * 119.88301 * 180.02562 * 2 1 3 17 17 F 1.35095 * 120.15532 * 359.97438 * 16 2 1 18 18 H 1.09003 * 109.47566 * 89.99374 * 1 2 3 19 19 H 1.09006 * 109.47412 * 209.99539 * 1 2 3 20 20 H 1.09002 * 109.47093 * 329.99466 * 1 2 3 21 21 H 1.08001 * 119.73398 * 359.75282 * 3 2 1 22 22 H 1.08000 * 120.12027 * 180.02562 * 6 4 3 23 23 H 0.97002 * 119.99984 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.2008 0.0000 4 6 3.5848 1.2164 -0.0005 5 35 4.5075 2.8671 0.0002 6 6 4.2927 0.0358 -0.0016 7 6 3.6043 -1.1912 -0.0027 8 6 4.3204 -2.4093 -0.0033 9 1 3.8638 -3.3044 0.3926 10 6 5.6213 -2.4559 -0.5168 11 7 6.0535 -1.4944 -1.2920 12 14 6.7409 -3.8906 -0.0956 13 1 6.5698 -4.9653 -1.1060 14 1 8.1535 -3.4326 -0.0945 15 1 6.3894 -4.4147 1.2487 16 6 2.1942 -1.1960 -0.0005 17 9 1.5195 -2.3664 -0.0005 18 1 -0.3634 0.0001 -1.0277 19 1 -0.3634 -0.8901 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6509 2.1325 -0.0040 22 1 5.3726 0.0514 -0.0016 23 1 6.9552 -1.5269 -1.6482 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075898781.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:06 Heat of formation + Delta-G solvation = -57.400891 kcal Electronic energy + Delta-G solvation = -11818.887336 eV Core-core repulsion = 9398.212457 eV Total energy + Delta-G solvation = -2420.674879 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.28079 -39.44979 -35.99694 -33.48178 -32.48097 -29.99809 -27.57338 -27.30523 -22.85726 -21.97410 -19.05259 -18.02897 -17.41031 -16.58326 -16.14764 -15.68603 -14.75097 -14.28152 -14.14366 -13.94675 -13.53572 -13.45828 -13.06008 -12.79638 -12.73666 -12.24629 -11.84413 -11.59324 -11.39081 -11.02504 -10.96411 -9.51768 -9.13944 -8.77130 -6.51137 0.51937 0.75214 0.90642 1.36428 1.43789 1.52102 2.15708 2.49950 3.33622 3.90413 4.12842 4.47783 4.59505 4.81298 4.84602 4.96953 5.09703 5.19984 5.34730 5.59634 5.71691 5.86525 6.00770 6.36953 6.67473 6.72425 8.17959 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.010564 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.128139 B = 2649.946924 C = 3973.221178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.085 4.085 3 C -0.194 4.194 4 C -0.069 4.069 5 Br -0.068 7.068 6 C -0.143 4.143 7 C 0.061 3.939 8 C -0.485 4.485 9 H 0.077 0.923 10 C 0.040 3.960 11 N -0.810 5.810 12 Si 0.985 3.015 13 H -0.261 1.261 14 H -0.259 1.259 15 H -0.259 1.259 16 C -0.049 4.049 17 F -0.162 7.162 18 H 0.076 0.924 19 H 0.060 0.940 20 H 0.088 0.912 21 H 0.138 0.862 22 H 0.122 0.878 23 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 5.595 1.698 6.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.215 4.215 4 C -0.148 4.148 5 Br 0.017 6.983 6 C -0.165 4.165 7 C 0.057 3.943 8 C -0.514 4.514 9 H 0.095 0.905 10 C -0.178 4.178 11 N -0.434 5.434 12 Si 0.805 3.195 13 H -0.185 1.185 14 H -0.183 1.183 15 H -0.183 1.183 16 C -0.069 4.069 17 F -0.141 7.141 18 H 0.095 0.905 19 H 0.079 0.921 20 H 0.107 0.893 21 H 0.156 0.844 22 H 0.140 0.860 23 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.138 6.261 1.544 6.549 hybrid contribution 0.317 -1.198 -0.035 1.240 sum -0.822 5.063 1.508 5.346 Atomic orbital electron populations 1.20660 0.88825 1.03260 1.02866 1.19790 0.97419 0.90918 1.00602 1.20352 0.91144 0.97115 1.12839 1.21650 0.94875 0.90427 1.07828 1.96430 1.77511 1.26360 1.97997 1.21059 0.99742 0.89679 1.05974 1.17899 0.90088 0.94760 0.91562 1.19708 0.99511 0.95704 1.36433 0.90471 1.26774 0.99021 1.00414 0.91564 1.69818 1.19197 1.33131 1.21285 0.85148 0.77022 0.77339 0.79994 1.18530 1.18341 1.18281 1.18016 0.90123 0.80734 1.18029 1.91237 1.80101 1.47535 1.95238 0.90548 0.92059 0.89314 0.84433 0.85997 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 9.83 71.24 0.70 -2.52 14 2 C -0.09 -3.65 5.88 -19.87 -0.12 -3.77 14 3 C -0.19 -8.00 9.44 22.46 0.21 -7.79 14 4 C -0.07 -3.07 6.21 22.26 0.14 -2.93 14 5 Br -0.07 -2.50 33.69 -20.37 -0.69 -3.19 14 6 C -0.14 -7.31 8.42 22.73 0.19 -7.12 14 7 C 0.06 3.29 5.57 -21.25 -0.12 3.17 14 8 C -0.49 -26.12 8.78 23.43 0.21 -25.91 14 9 H 0.08 4.12 7.74 -2.91 -0.02 4.10 14 10 C 0.04 1.94 5.14 85.25 0.44 2.38 14 11 N -0.81 -40.82 10.97 21.83 0.24 -40.58 14 12 Si 0.99 37.20 29.59 68.60 2.03 39.23 14 13 H -0.26 -9.52 7.11 99.48 0.71 -8.81 14 14 H -0.26 -9.14 7.11 99.48 0.71 -8.43 14 15 H -0.26 -9.71 7.11 99.48 0.71 -9.01 14 16 C -0.05 -2.44 7.24 22.88 0.17 -2.27 14 17 F -0.16 -8.04 15.92 44.97 0.72 -7.33 14 18 H 0.08 2.26 8.14 -2.39 -0.02 2.24 14 19 H 0.06 1.97 7.63 -2.38 -0.02 1.95 14 20 H 0.09 2.34 8.08 -2.39 -0.02 2.32 14 21 H 0.14 4.80 8.06 -2.91 -0.02 4.78 14 22 H 0.12 6.46 6.19 -2.91 -0.02 6.44 14 23 H 0.30 13.33 8.30 -92.71 -0.77 12.56 14 Total: -1.00 -55.82 232.13 5.35 -50.48 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.23 Total: 8.15 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 1.82 Total: -46.75 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.24 Total: -40.58 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.72 Total: -7.33 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 35 Polarization: -2.50 SS G_CDS: -0.69 Total: -3.19 kcal Total: -55.82 5.35 -50.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075898781.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.925 kcal (2) G-P(sol) polarization free energy of solvation -55.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds