Wall clock time and date at job start Mon Mar 30 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38704 * 119.77123 * 2 1 4 4 C 1.38569 * 120.53318 * 180.02562 * 3 2 1 5 5 Br 1.89104 * 119.96469 * 179.97438 * 4 3 2 6 6 C 1.38107 * 120.07033 * 359.69786 * 4 3 2 7 7 F 1.35092 * 120.22890 * 180.29695 * 6 4 3 8 8 C 1.40969 * 119.54042 * 0.57536 * 6 4 3 9 9 C 1.41291 * 120.25815 * 179.72141 * 8 6 4 10 10 H 1.07998 * 120.00026 * 334.39415 * 9 8 6 11 11 C 1.39939 * 119.99757 * 154.39043 * 9 8 6 12 12 N 1.30841 * 120.00172 * 334.59734 * 11 9 8 13 13 Si 1.86800 * 119.99674 * 154.60409 * 11 9 8 14 14 H 1.48510 * 109.46638 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47085 * 299.99079 * 13 11 9 16 16 H 1.48490 * 109.47579 * 59.99914 * 13 11 9 17 17 C 1.36545 * 119.77016 * 180.02562 * 2 1 3 18 18 H 1.08995 * 109.46717 * 269.97660 * 1 2 3 19 19 H 1.09003 * 109.46822 * 29.97840 * 1 2 3 20 20 H 1.08996 * 109.47131 * 149.97207 * 1 2 3 21 21 H 1.08005 * 119.73669 * 0.02562 * 3 2 1 22 22 H 0.97006 * 120.00010 * 354.18301 * 12 11 9 23 23 H 1.08008 * 120.04142 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2040 0.0000 4 6 3.5813 1.2224 -0.0005 5 35 4.5040 2.8731 -0.0013 6 6 4.2892 0.0365 0.0052 7 9 5.6400 0.0508 0.0108 8 6 3.5923 -1.1889 -0.0007 9 6 4.3013 -2.4110 -0.0008 10 1 5.3034 -2.4539 -0.4011 11 6 3.7049 -3.5659 0.5177 12 7 2.7611 -3.4668 1.4185 13 14 4.2563 -5.2490 -0.0762 14 1 3.4751 -6.3009 0.6230 15 1 4.0312 -5.3555 -1.5401 16 1 5.7008 -5.4287 0.2171 17 6 2.1850 -1.1852 -0.0005 18 1 -0.3632 -0.0004 1.0276 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3633 -0.8897 -0.5142 21 1 1.6477 2.1346 0.0004 22 1 2.5332 -2.5997 1.7888 23 1 1.6419 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075925819.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:44 Heat of formation + Delta-G solvation = -61.020886 kcal Electronic energy + Delta-G solvation = -11856.869385 eV Core-core repulsion = 9436.037531 eV Total energy + Delta-G solvation = -2420.831854 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.40443 -39.82085 -36.20602 -33.64154 -32.34287 -30.15353 -27.69259 -26.97211 -23.22107 -22.02941 -19.73584 -18.06524 -17.38928 -16.34504 -16.20134 -15.62783 -14.79584 -14.66060 -14.35570 -14.19238 -13.95940 -13.07999 -12.85205 -12.82982 -12.53210 -12.02913 -11.96552 -11.62796 -11.44344 -11.21768 -10.92499 -9.70738 -9.50348 -9.16712 -6.64290 0.38211 0.58920 0.65870 1.49995 1.57997 1.80111 2.27469 2.45088 3.16821 3.69905 4.09599 4.34810 4.52625 4.61230 4.86383 4.91781 5.06330 5.17425 5.32107 5.55384 5.62508 5.75393 5.89217 6.05610 6.51098 6.65448 7.88809 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.008282 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.199380 B = 3380.067109 C = 4133.098389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.053 4.053 3 C -0.200 4.200 4 C -0.075 4.075 5 Br -0.054 7.054 6 C -0.048 4.048 7 F -0.158 7.158 8 C 0.051 3.949 9 C -0.539 4.539 10 H 0.070 0.930 11 C 0.011 3.989 12 N -0.797 5.797 13 Si 1.117 2.883 14 H -0.264 1.264 15 H -0.260 1.260 16 H -0.262 1.262 17 C -0.202 4.202 18 H 0.077 0.923 19 H 0.084 0.916 20 H 0.065 0.935 21 H 0.141 0.859 22 H 0.287 0.713 23 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 6.010 -2.149 6.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.054 4.054 3 C -0.220 4.220 4 C -0.155 4.155 5 Br 0.031 6.969 6 C -0.071 4.071 7 F -0.137 7.137 8 C 0.047 3.953 9 C -0.566 4.566 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.419 5.419 13 Si 0.933 3.067 14 H -0.188 1.188 15 H -0.185 1.185 16 H -0.187 1.187 17 C -0.221 4.221 18 H 0.095 0.905 19 H 0.102 0.898 20 H 0.084 0.916 21 H 0.159 0.841 22 H 0.100 0.900 23 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.188 5.042 -1.946 5.831 hybrid contribution 0.693 1.472 -0.002 1.627 sum -1.494 6.514 -1.948 6.961 Atomic orbital electron populations 1.20758 0.88876 1.03265 1.02885 1.19713 0.97399 0.91815 0.96512 1.20445 0.90055 0.98415 1.13115 1.21739 0.95840 0.88898 1.08998 1.96469 1.77462 1.25073 1.97903 1.17720 0.76418 0.93751 1.19171 1.91278 1.29892 1.97270 1.95229 1.17958 0.93509 0.91553 0.92307 1.20697 1.03471 0.94737 1.37682 0.91180 1.28483 0.91869 1.08510 0.91878 1.70590 1.23214 1.30899 1.17198 0.83006 0.77353 0.68893 0.77466 1.18771 1.18489 1.18668 1.20805 0.92478 0.97831 1.11021 0.90450 0.89752 0.91610 0.84148 0.90018 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.06 9.99 71.24 0.71 -2.35 14 2 C -0.05 -2.17 5.84 -20.15 -0.12 -2.28 14 3 C -0.20 -8.05 9.43 22.46 0.21 -7.84 14 4 C -0.07 -3.34 6.22 22.32 0.14 -3.20 14 5 Br -0.05 -2.00 33.28 -20.37 -0.68 -2.68 14 6 C -0.05 -2.50 7.28 22.91 0.17 -2.33 14 7 F -0.16 -8.25 16.20 44.97 0.73 -7.53 14 8 C 0.05 2.72 5.31 -21.25 -0.11 2.60 14 9 C -0.54 -29.03 8.71 23.43 0.20 -28.82 14 10 H 0.07 3.83 7.81 -2.91 -0.02 3.81 14 11 C 0.01 0.53 4.94 85.25 0.42 0.95 14 12 N -0.80 -40.78 12.31 21.83 0.27 -40.51 14 13 Si 1.12 41.55 30.00 68.60 2.06 43.61 14 14 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 15 H -0.26 -9.14 7.11 99.48 0.71 -8.44 14 16 H -0.26 -9.22 7.11 99.48 0.71 -8.51 14 17 C -0.20 -9.70 7.52 22.48 0.17 -9.53 14 18 H 0.08 2.15 8.14 -2.39 -0.02 2.13 14 19 H 0.08 2.11 8.08 -2.39 -0.02 2.09 14 20 H 0.06 1.92 8.08 -2.39 -0.02 1.90 14 21 H 0.14 4.76 8.06 -2.91 -0.02 4.74 14 22 H 0.29 15.23 6.68 -92.70 -0.62 14.61 14 23 H 0.11 5.42 6.48 -2.91 -0.02 5.40 14 Total: -1.00 -56.43 231.68 5.55 -50.88 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.38 Total: 9.02 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 1.79 Total: -52.80 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.27 Total: -40.51 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.73 Total: -7.53 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.06 Total: 43.61 kcal Atomic # 35 Polarization: -2.00 SS G_CDS: -0.68 Total: -2.68 kcal Total: -56.43 5.55 -50.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075925819.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.137 kcal (2) G-P(sol) polarization free energy of solvation -56.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds