Wall clock time and date at job start Mon Mar 30 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48500 * 109.46822 * 240.00084 * 3 2 1 5 5 H 1.48502 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47167 * 119.99975 * 3 2 1 7 7 C 1.39827 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99705 * 197.98879 * 7 2 1 9 9 C 1.41063 * 120.00314 * 17.98885 * 7 2 1 10 10 C 1.40947 * 120.14555 * 204.63712 * 9 7 2 11 11 C 1.36259 * 119.86269 * 179.76047 * 10 9 7 12 12 C 1.39682 * 120.16184 * 0.52157 * 11 10 9 13 13 S 1.76194 * 119.85868 * 179.75512 * 12 11 10 14 14 C 1.39766 * 120.28525 * 359.48069 * 12 11 10 15 15 Br 1.89095 * 119.93521 * 180.27880 * 14 12 11 16 16 C 1.36354 * 120.13290 * 0.25147 * 14 12 11 17 17 H 0.96997 * 120.00536 * 359.97438 * 1 2 3 18 18 H 1.08007 * 120.06526 * 0.02562 * 10 9 7 19 19 H 1.08006 * 119.92271 * 180.27217 * 11 10 9 20 20 H 1.40998 * 100.00323 * 269.72538 * 13 12 11 21 21 H 1.07999 * 120.07298 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0084 -1.2109 0.0005 8 1 3.0488 -1.2336 0.2894 9 6 1.3548 -2.4029 -0.3762 10 6 1.8270 -3.6467 0.0894 11 6 1.1884 -4.7941 -0.2742 12 6 0.0744 -4.7410 -1.1152 13 16 -0.7414 -6.2302 -1.5855 14 6 -0.3993 -3.5113 -1.5808 15 35 -1.9128 -3.4504 -2.7127 16 6 0.2275 -2.3553 -1.2201 17 1 -0.4851 0.8400 0.0004 18 1 2.6907 -3.6897 0.7365 19 1 1.5467 -5.7473 0.0856 20 1 -0.0281 -6.5393 -2.7618 21 1 -0.1392 -1.4056 -1.5807 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078234520.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:13 Heat of formation + Delta-G solvation = 10.811067 kcal Electronic energy + Delta-G solvation = -9804.098842 eV Core-core repulsion = 7816.761937 eV Total energy + Delta-G solvation = -1987.336905 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 257.941 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.74783 -34.05327 -31.31417 -29.89644 -28.12108 -25.69445 -21.48812 -20.73387 -17.58998 -16.85951 -15.57620 -14.60573 -14.01956 -13.90735 -12.89499 -12.47848 -12.32111 -11.56786 -11.41302 -11.31850 -10.89535 -10.47380 -9.93912 -9.84037 -9.74358 -9.36779 -9.29101 -7.72146 -7.65808 -7.15561 -7.11555 -4.73665 2.05786 2.62252 2.70420 2.83204 2.90610 2.92538 3.02987 3.58992 3.68490 4.26998 5.29184 5.99826 6.45208 6.68410 6.74358 6.90961 7.09221 7.29804 7.52443 7.64400 7.85372 8.17293 8.47438 8.51925 9.79291 Molecular weight = 257.94amu Principal moments of inertia in cm(-1) A = 0.032532 B = 0.008877 C = 0.007128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.481662 B = 3153.611125 C = 3926.986321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.089 0.911 9 C 0.128 3.872 10 C -0.229 4.229 11 C -0.030 4.030 12 C -0.229 4.229 13 S -0.170 6.170 14 C -0.009 4.009 15 Br -0.089 7.089 16 C -0.148 4.148 17 H 0.291 0.709 18 H 0.104 0.896 19 H 0.106 0.894 20 H 0.063 0.937 21 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 -1.587 -2.981 3.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.107 0.893 9 C 0.124 3.876 10 C -0.251 4.251 11 C -0.051 4.051 12 C -0.344 4.344 13 S -0.013 6.013 14 C -0.091 4.091 15 Br -0.004 7.004 16 C -0.171 4.171 17 H 0.102 0.898 18 H 0.122 0.878 19 H 0.124 0.876 20 H 0.028 0.972 21 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.305 -2.180 -3.452 4.689 hybrid contribution 1.607 1.446 -0.167 2.168 sum -0.698 -0.734 -3.619 3.758 Atomic orbital electron populations 1.69836 1.07795 1.30580 1.30658 1.26110 0.94904 1.02091 0.91950 0.86201 0.80170 0.79248 0.80386 1.18406 1.19880 1.18555 1.19718 0.98576 0.91069 1.36924 0.89343 1.17711 0.89981 0.92540 0.87399 1.20787 1.04369 0.92541 1.07373 1.20587 0.92808 0.97461 0.94286 1.20192 1.06687 0.91472 1.16093 1.86245 1.50884 1.30506 1.33679 1.21576 0.93321 0.95701 0.98484 1.96420 1.40035 1.99118 1.64837 1.21067 0.99107 0.95882 1.01002 0.89820 0.87813 0.87604 0.97246 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.25 10.96 55.54 0.61 -17.65 14 2 C 0.07 1.63 5.13 -17.34 -0.09 1.54 14 3 Si 0.92 16.92 29.60 -169.99 -5.03 11.89 14 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 14 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 6 H -0.26 -4.75 7.11 56.52 0.40 -4.34 14 7 C -0.44 -10.48 9.03 -37.92 -0.34 -10.82 14 8 H 0.09 2.00 7.91 -52.48 -0.41 1.58 14 9 C 0.13 3.18 5.57 -106.79 -0.60 2.59 14 10 C -0.23 -5.25 9.74 -39.27 -0.38 -5.63 14 11 C -0.03 -0.65 9.73 -39.75 -0.39 -1.04 14 12 C -0.23 -5.21 6.16 -38.47 -0.24 -5.44 14 13 S -0.17 -3.39 24.45 -107.50 -2.63 -6.01 14 14 C -0.01 -0.20 6.20 -39.69 -0.25 -0.45 14 15 Br -0.09 -1.83 32.36 -68.01 -2.20 -4.03 14 16 C -0.15 -3.68 8.35 -39.25 -0.33 -4.01 14 17 H 0.29 6.26 8.30 -40.82 -0.34 5.93 14 18 H 0.10 2.16 8.06 -52.48 -0.42 1.74 14 19 H 0.11 2.04 8.06 -52.48 -0.42 1.62 14 20 H 0.06 1.18 9.55 96.90 0.93 2.11 14 21 H 0.13 3.38 6.16 -52.49 -0.32 3.05 14 LS Contribution 226.62 15.07 3.42 3.42 Total: -1.00 -24.66 226.62 -8.23 -32.90 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 0.21 Total: 2.75 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.61 Total: -23.27 kcal Atomic # 7 Polarization: -18.25 SS G_CDS: 0.61 Total: -17.65 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.63 Total: -6.01 kcal Atomic # 35 Polarization: -1.83 SS G_CDS: -2.20 Total: -4.03 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -24.66 -8.23 -32.90 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078234520.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.710 kcal (2) G-P(sol) polarization free energy of solvation -24.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds