Wall clock time and date at job start Mon Mar 30 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47100 * 2 1 4 4 C 1.50694 * 109.47141 * 120.00666 * 2 1 3 5 5 H 1.07995 * 120.00065 * 120.00024 * 4 2 1 6 6 C 1.37875 * 119.99983 * 299.99284 * 4 2 1 7 7 N 1.31517 * 119.99746 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47223 * 90.00074 * 8 6 4 10 10 H 1.48498 * 109.47616 * 210.00403 * 8 6 4 11 11 H 1.48499 * 109.47331 * 330.00534 * 8 6 4 12 12 S 1.81407 * 109.46657 * 240.00545 * 2 1 3 13 13 O 1.42095 * 109.47129 * 305.93891 * 12 2 1 14 14 C 1.76199 * 103.00290 * 54.99826 * 12 2 1 15 15 C 1.38259 * 119.99262 * 269.72220 * 14 12 2 16 16 C 1.38221 * 120.02658 * 179.76657 * 15 14 12 17 17 C 1.38239 * 120.01149 * 0.50999 * 16 15 14 18 18 C 1.38334 * 119.98526 * 359.74144 * 17 16 15 19 19 Cl 1.73603 * 120.01229 * 180.02562 * 18 17 16 20 20 C 1.38195 * 119.99023 * 89.99816 * 14 12 2 21 21 H 1.08996 * 109.47142 * 299.99419 * 1 2 3 22 22 H 1.09004 * 109.47606 * 59.99904 * 1 2 3 23 23 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 24 24 H 0.97007 * 119.99541 * 179.97438 * 7 6 4 25 25 H 1.08001 * 119.98946 * 0.02562 * 15 14 12 26 26 H 1.08002 * 119.99627 * 180.25866 * 16 15 14 27 27 H 1.07992 * 120.00783 * 179.77042 * 17 16 15 28 28 H 1.07995 * 120.00944 * 359.95393 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.6306 -0.5444 4.4117 10 1 1.3446 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7120 12 16 2.1346 -0.8550 -1.4813 13 8 1.5511 -2.1487 -1.5528 14 6 1.3382 0.0120 -2.7923 15 6 0.1036 -0.4097 -3.2501 16 6 -0.5239 0.2729 -4.2753 17 6 0.0874 1.3712 -4.8505 18 6 1.3250 1.7904 -4.3963 19 17 2.0930 3.1701 -5.1177 20 6 1.9504 1.1099 -3.3665 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.7084 1.1607 3.4845 25 1 -0.3726 -1.2702 -2.8038 26 1 -1.4902 -0.0544 -4.6297 27 1 -0.4013 1.9022 -5.6539 28 1 2.9164 1.4369 -3.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:56 Heat of formation + Delta-G solvation = -27.170662 kcal Electronic energy + Delta-G solvation = -14688.766004 eV Core-core repulsion = 12050.042868 eV Total energy + Delta-G solvation = -2638.723136 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94278 -36.37345 -34.79540 -33.99746 -31.08805 -30.62223 -30.12574 -25.35236 -22.80397 -22.52896 -21.39137 -18.02245 -16.46750 -16.33031 -15.45517 -15.22779 -14.92556 -14.18808 -13.95173 -13.59027 -13.30689 -12.89447 -12.11084 -11.75394 -11.70461 -11.37376 -11.30820 -11.12888 -10.95293 -10.92161 -10.80788 -10.33925 -10.29309 -9.25614 -9.19695 -8.95419 -8.60960 -8.51118 -7.33319 -6.14034 -4.27703 1.11414 1.34529 2.15046 2.69385 3.23326 3.30475 3.35869 3.54315 3.93251 4.31765 4.73627 4.92916 5.02935 5.16772 5.39681 5.50776 5.71406 5.88619 6.21023 6.38737 6.48421 6.60757 6.76297 6.80481 6.88606 7.34604 7.64118 7.74930 8.09910 8.73217 9.38148 10.89963 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.032136 B = 0.005766 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.079604 B = 4854.973225 C = 5130.582403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.226 4.226 3 H 0.079 0.921 4 C -0.512 4.512 5 H 0.063 0.937 6 C 0.073 3.927 7 N -0.880 5.880 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.271 1.271 12 S 1.274 4.726 13 O -0.864 6.864 14 C -0.424 4.424 15 C -0.048 4.048 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.053 4.053 19 Cl -0.079 7.079 20 C -0.041 4.041 21 H 0.089 0.911 22 H 0.013 0.987 23 H 0.032 0.968 24 H 0.263 0.737 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 3.833 -12.535 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.347 4.347 3 H 0.096 0.904 4 C -0.551 4.551 5 H 0.081 0.919 6 C -0.131 4.131 7 N -0.517 5.517 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.196 1.196 12 S 1.474 4.526 13 O -0.860 6.860 14 C -0.518 4.518 15 C -0.067 4.067 16 C -0.147 4.147 17 C -0.111 4.111 18 C -0.080 4.080 19 Cl -0.050 7.050 20 C -0.060 4.060 21 H 0.108 0.892 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.016 3.293 -12.604 13.372 hybrid contribution -2.135 -0.114 0.910 2.323 sum 0.881 3.179 -11.694 12.151 Atomic orbital electron populations 1.21777 0.96730 0.99873 1.01207 1.24761 0.99557 1.04717 1.05635 0.90357 1.20450 1.32843 1.12626 0.89185 0.91889 1.24913 0.94481 0.94747 0.98968 1.69887 1.35528 1.22544 1.23758 0.86499 0.78742 0.80259 0.82079 1.20141 1.21066 1.19604 1.68954 1.14577 0.83392 0.85666 1.92995 1.78240 1.30369 1.84346 1.28417 1.03314 1.05537 1.14493 1.21261 0.93429 0.97881 0.94134 1.21187 1.00256 0.95862 0.97358 1.21066 0.93551 0.96839 0.99687 1.20997 0.95626 0.92399 0.98978 1.98350 1.81313 1.42529 1.82850 1.20756 0.99612 0.92707 0.92973 0.89212 0.96805 0.94865 0.92674 0.85107 0.85425 0.85301 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.56 37.16 0.32 -3.03 15 2 C -0.23 -5.28 2.80 -27.89 -0.08 -5.35 15 3 H 0.08 1.81 8.14 -51.93 -0.42 1.39 15 4 C -0.51 -13.44 8.58 -34.44 -0.30 -13.74 15 5 H 0.06 1.63 7.71 -52.49 -0.40 1.22 15 6 C 0.07 1.96 5.30 -17.82 -0.09 1.86 15 7 N -0.88 -24.25 11.32 55.43 0.63 -23.63 15 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 12 S 1.27 24.20 13.03 -107.50 -1.40 22.80 15 13 O -0.86 -20.82 16.77 -35.23 -0.59 -21.41 15 14 C -0.42 -7.23 4.80 -39.59 -0.19 -7.42 15 15 C -0.05 -0.83 8.25 -39.58 -0.33 -1.16 15 16 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 15 17 C -0.09 -1.22 9.83 -39.55 -0.39 -1.61 15 18 C -0.05 -0.73 6.32 -39.50 -0.25 -0.98 15 19 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 15 20 C -0.04 -0.59 9.54 -39.55 -0.38 -0.97 15 21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 15 22 H 0.01 0.29 6.39 -51.93 -0.33 -0.04 15 23 H 0.03 0.84 8.10 -51.93 -0.42 0.42 15 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 25 H 0.13 2.46 7.45 -52.49 -0.39 2.07 15 26 H 0.13 1.48 8.06 -52.49 -0.42 1.05 15 27 H 0.13 1.37 8.06 -52.49 -0.42 0.94 15 28 H 0.14 1.66 8.06 -52.49 -0.42 1.24 15 LS Contribution 271.30 15.07 4.09 4.09 Total: -1.00 -31.83 271.30 -8.57 -40.39 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -2.69 Total: -0.80 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -2.08 Total: -34.60 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.63 Total: -23.63 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.59 Total: -21.41 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 24.20 SS G_CDS: -1.40 Total: 22.80 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.83 -8.57 -40.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.223 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds