Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47344 * 2 1 4 4 C 1.50696 * 109.47178 * 119.99962 * 2 1 3 5 5 H 1.08007 * 120.00006 * 120.00259 * 4 2 1 6 6 C 1.37878 * 120.00218 * 299.99947 * 4 2 1 7 7 N 1.31515 * 119.99805 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99953 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46902 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47316 * 120.00131 * 8 6 4 11 11 H 1.48498 * 109.46706 * 239.99820 * 8 6 4 12 12 S 1.81398 * 109.46999 * 240.00213 * 2 1 3 13 13 O 1.42100 * 109.47094 * 164.05327 * 12 2 1 14 14 C 1.76198 * 103.00290 * 54.99921 * 12 2 1 15 15 C 1.38263 * 119.99302 * 269.72763 * 14 12 2 16 16 C 1.38221 * 120.02714 * 180.27218 * 15 14 12 17 17 C 1.38237 * 120.01233 * 359.97438 * 16 15 14 18 18 C 1.38326 * 119.98831 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01212 * 180.02562 * 18 17 16 20 20 C 1.38195 * 119.99638 * 89.99983 * 14 12 2 21 21 H 1.08998 * 109.46939 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46886 * 299.99910 * 1 2 3 23 23 H 1.08999 * 109.47154 * 59.99497 * 1 2 3 24 24 H 0.97000 * 119.99352 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.98863 * 0.24508 * 15 14 12 26 26 H 1.08003 * 119.98963 * 179.97438 * 16 15 14 27 27 H 1.08004 * 120.00155 * 180.02562 * 17 16 15 28 28 H 1.08002 * 120.00463 * 359.70689 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6036 10 1 3.1474 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8164 12 16 2.1346 -0.8551 -1.4812 13 8 3.5070 -0.5449 -1.6801 14 6 1.3384 0.0119 -2.7922 15 6 0.1037 -0.4098 -3.2501 16 6 -0.5190 0.2664 -4.2823 17 6 0.0921 1.3651 -4.8572 18 6 1.3273 1.7874 -4.3996 19 17 2.0950 3.1674 -5.1206 20 6 1.9504 1.1097 -3.3665 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7091 1.1613 3.4844 25 1 -0.3741 -1.2681 -2.8013 26 1 -1.4832 -0.0637 -4.6397 27 1 -0.3948 1.8935 -5.6634 28 1 2.9147 1.4392 -3.0086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787797.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = -28.174511 kcal Electronic energy + Delta-G solvation = -14664.228989 eV Core-core repulsion = 12025.462323 eV Total energy + Delta-G solvation = -2638.766666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94068 -36.33484 -34.82764 -34.03608 -31.07917 -30.62961 -30.14134 -25.35388 -22.79417 -22.55211 -21.45973 -18.03184 -16.51979 -16.22229 -15.39263 -15.31058 -14.94209 -14.11585 -13.84339 -13.67099 -13.30937 -13.04357 -12.35104 -11.87625 -11.55652 -11.44239 -11.32741 -11.09680 -10.95058 -10.92284 -10.54648 -10.41368 -10.31668 -9.30002 -9.16674 -8.94094 -8.63202 -8.56334 -7.34367 -6.16264 -4.29658 1.10439 1.35461 2.20770 2.64658 3.21735 3.30404 3.34822 3.53173 3.90301 4.30695 4.73847 4.93340 5.03912 5.15362 5.31086 5.56623 5.69056 5.90500 6.26716 6.33770 6.45596 6.57818 6.71300 6.78001 6.88224 7.31763 7.60865 7.75732 8.07595 8.71638 9.36349 10.88746 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.033072 B = 0.005677 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.433772 B = 4931.353467 C = 5018.884919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.225 4.225 3 H 0.048 0.952 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.073 3.927 7 N -0.880 5.880 8 Si 0.899 3.101 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.280 1.280 12 S 1.274 4.726 13 O -0.872 6.872 14 C -0.424 4.424 15 C -0.042 4.042 16 C -0.128 4.128 17 C -0.093 4.093 18 C -0.051 4.051 19 Cl -0.082 7.082 20 C -0.048 4.048 21 H 0.043 0.957 22 H 0.091 0.909 23 H 0.018 0.982 24 H 0.263 0.737 25 H 0.141 0.859 26 H 0.133 0.867 27 H 0.129 0.871 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 -2.765 -11.990 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.346 4.346 3 H 0.066 0.934 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.132 4.132 7 N -0.517 5.517 8 Si 0.726 3.274 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.206 1.206 12 S 1.475 4.525 13 O -0.867 6.867 14 C -0.518 4.518 15 C -0.061 4.061 16 C -0.147 4.147 17 C -0.112 4.112 18 C -0.078 4.078 19 Cl -0.053 7.053 20 C -0.068 4.068 21 H 0.062 0.938 22 H 0.110 0.890 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.159 0.841 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.129 -3.274 -12.068 13.515 hybrid contribution 0.774 2.250 0.739 2.492 sum -4.355 -1.024 -11.329 12.181 Atomic orbital electron populations 1.21556 0.94859 1.00267 1.01534 1.24724 0.99967 1.04544 1.05344 0.93406 1.20457 1.32584 1.12973 0.89040 0.91735 1.24923 0.94480 0.94739 0.99008 1.69895 1.35694 1.22371 1.23699 0.86422 0.78803 0.79798 0.82419 1.19293 1.20869 1.20599 1.68965 0.86772 1.11862 0.84913 1.92993 1.27794 1.83021 1.82920 1.28418 1.03941 1.04940 1.14472 1.20990 0.92555 0.98448 0.94108 1.21199 1.00280 0.95819 0.97421 1.21084 0.93348 0.97026 0.99769 1.21046 0.95702 0.92354 0.98722 1.98347 1.81505 1.42630 1.82804 1.21086 0.99517 0.93094 0.93105 0.93823 0.89042 0.96350 0.92685 0.84130 0.84926 0.85278 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 8.62 37.16 0.32 -2.26 15 2 C -0.22 -5.32 2.80 -27.88 -0.08 -5.40 15 3 H 0.05 1.31 8.14 -51.92 -0.42 0.89 15 4 C -0.51 -13.34 8.58 -34.44 -0.30 -13.63 15 5 H 0.06 1.63 7.71 -52.48 -0.40 1.22 15 6 C 0.07 1.94 5.30 -17.82 -0.09 1.84 15 7 N -0.88 -24.23 11.32 55.43 0.63 -23.61 15 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 9 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 12 S 1.27 24.68 12.99 -107.50 -1.40 23.28 15 13 O -0.87 -21.65 16.90 -35.23 -0.60 -22.25 15 14 C -0.42 -7.31 4.80 -39.59 -0.19 -7.50 15 15 C -0.04 -0.56 8.56 -39.58 -0.34 -0.90 15 16 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 15 17 C -0.09 -1.23 9.83 -39.55 -0.39 -1.62 15 18 C -0.05 -0.80 6.32 -39.50 -0.25 -1.05 15 19 Cl -0.08 -1.20 28.96 -51.86 -1.50 -2.70 15 20 C -0.05 -0.89 9.23 -39.55 -0.36 -1.26 15 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.09 2.22 6.07 -51.93 -0.32 1.91 15 23 H 0.02 0.33 6.39 -51.93 -0.33 0.00 15 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.13 1.13 8.06 -52.48 -0.42 0.71 15 27 H 0.13 1.36 8.06 -52.48 -0.42 0.94 15 28 H 0.13 2.74 7.46 -52.49 -0.39 2.35 15 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -32.53 271.51 -8.56 -41.09 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -2.69 Total: -1.59 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -2.08 Total: -33.72 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.63 Total: -23.61 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.60 Total: -22.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 24.68 SS G_CDS: -1.40 Total: 23.28 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.53 -8.56 -41.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787797.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.917 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds