Wall clock time and date at job start Mon Mar 30 2020 06:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47512 * 2 1 4 4 C 1.50704 * 109.47123 * 120.00272 * 2 1 3 5 5 H 1.08004 * 119.99705 * 119.99789 * 4 2 1 6 6 C 1.37877 * 119.99959 * 300.00169 * 4 2 1 7 7 N 1.31511 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47407 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46986 * 119.99678 * 8 6 4 11 11 H 1.48505 * 109.46872 * 239.99500 * 8 6 4 12 12 S 1.81401 * 109.47172 * 240.00016 * 2 1 3 13 13 O 1.42097 * 109.47209 * 305.94698 * 12 2 1 14 14 C 1.76204 * 102.99755 * 55.00094 * 12 2 1 15 15 C 1.38246 * 119.98704 * 90.00271 * 14 12 2 16 16 C 1.38215 * 120.01338 * 180.27954 * 15 14 12 17 17 C 1.38358 * 119.98339 * 359.46462 * 16 15 14 18 18 Cl 1.73596 * 120.00861 * 180.24067 * 17 16 15 19 19 C 1.38349 * 119.97593 * 0.51073 * 17 16 15 20 20 C 1.38212 * 119.98495 * 359.74279 * 19 17 16 21 21 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46878 * 299.99790 * 1 2 3 23 23 H 1.08996 * 109.46770 * 59.99923 * 1 2 3 24 24 H 0.97000 * 120.00097 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.98964 * 359.97438 * 15 14 12 26 26 H 1.07998 * 120.00901 * 179.70367 * 16 15 14 27 27 H 1.08000 * 120.00704 * 179.72657 * 19 17 16 28 28 H 1.08004 * 119.99489 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.1475 -2.2865 3.6036 10 1 3.1473 -0.1860 4.8160 11 1 1.1678 -1.5868 4.8164 12 16 2.1347 -0.8551 -1.4811 13 8 1.5511 -2.1488 -1.5526 14 6 1.3384 0.0119 -2.7922 15 6 1.9509 1.1101 -3.3666 16 6 1.3242 1.7941 -4.3911 17 6 0.0885 1.3728 -4.8493 18 17 -0.6964 2.2277 -6.1403 19 6 -0.5238 0.2734 -4.2744 20 6 0.1016 -0.4066 -3.2464 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7095 1.1616 3.4844 25 1 2.9172 1.4366 -3.0113 26 1 1.8006 2.6550 -4.8365 27 1 -1.4903 -0.0532 -4.6287 28 1 -0.3764 -1.2646 -2.7973 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788057.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:02 Heat of formation + Delta-G solvation = -47.736415 kcal Electronic energy + Delta-G solvation = -14644.296131 eV Core-core repulsion = 12004.681197 eV Total energy + Delta-G solvation = -2639.614934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.10202 -37.50359 -36.57470 -35.93990 -32.49144 -32.06424 -31.59431 -27.35800 -23.95080 -23.80229 -23.25180 -19.29636 -18.32475 -17.94994 -17.02495 -16.55230 -16.42609 -15.65130 -15.35874 -14.89337 -14.47708 -14.46497 -13.96333 -13.56992 -13.15892 -12.99668 -12.89451 -12.74534 -12.56673 -12.52182 -12.30157 -12.07935 -11.85268 -11.18149 -10.82670 -10.49607 -10.03882 -9.95610 -9.01132 -8.14099 -6.33857 -0.19665 0.28881 0.98922 1.23795 1.40072 1.43838 1.55054 2.12423 2.40707 2.60982 3.08378 3.23955 3.77536 3.90458 4.36626 4.40695 4.59773 4.64594 4.78171 4.88052 4.92895 5.00100 5.14985 5.31011 5.38869 5.63174 5.73205 5.76965 6.12200 6.75117 7.34574 8.88596 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.042989 B = 0.005190 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.180274 B = 5393.475156 C = 5619.437830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.251 4.251 3 H 0.083 0.917 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.268 1.268 11 H -0.289 1.289 12 S 1.355 4.645 13 O -0.923 6.923 14 C -0.455 4.455 15 C -0.027 4.027 16 C -0.124 4.124 17 C -0.015 4.015 18 Cl -0.062 7.062 19 C -0.138 4.138 20 C -0.064 4.064 21 H 0.005 0.995 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.263 0.737 25 H 0.188 0.812 26 H 0.171 0.829 27 H 0.140 0.860 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 5.330 -14.024 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.370 4.370 3 H 0.100 0.900 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.188 1.188 10 H -0.193 1.193 11 H -0.215 1.215 12 S 1.556 4.444 13 O -0.919 6.919 14 C -0.552 4.552 15 C -0.046 4.046 16 C -0.143 4.143 17 C -0.042 4.042 18 Cl -0.033 7.033 19 C -0.157 4.157 20 C -0.084 4.084 21 H 0.025 0.975 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.205 0.795 26 H 0.188 0.812 27 H 0.158 0.842 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.374 4.729 -14.111 15.512 hybrid contribution -2.789 -0.519 1.106 3.044 sum 1.586 4.210 -13.005 13.761 Atomic orbital electron populations 1.21609 0.98172 0.97852 1.00737 1.24963 0.98296 1.05578 1.08120 0.89963 1.20861 1.32521 1.12546 0.90708 0.92180 1.25670 0.94815 0.95459 1.01758 1.69993 1.36692 1.23723 1.24166 0.85589 0.78213 0.79121 0.79351 1.18832 1.19265 1.21506 1.68096 1.12433 0.80720 0.83115 1.92878 1.79444 1.34433 1.85099 1.28107 1.03827 1.08429 1.14862 1.21370 1.00512 0.90321 0.92402 1.21571 0.93367 1.01602 0.97808 1.21233 0.95282 0.94901 0.92777 1.98365 1.80463 1.76233 1.48229 1.21189 1.01274 0.95884 0.97391 1.21015 0.94379 0.97828 0.95137 0.97539 0.91900 0.94936 0.92739 0.79521 0.81204 0.84217 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.28 8.56 71.98 0.62 -5.66 15 2 C -0.25 -11.69 2.80 29.85 0.08 -11.60 15 3 H 0.08 3.72 8.14 -2.39 -0.02 3.70 15 4 C -0.53 -27.87 8.58 25.60 0.22 -27.65 15 5 H 0.06 3.13 7.71 -2.91 -0.02 3.11 15 6 C 0.02 1.30 5.30 84.66 0.45 1.75 15 7 N -0.91 -50.62 11.32 21.45 0.24 -50.38 15 8 Si 0.95 42.39 29.54 68.60 2.03 44.42 15 9 H -0.26 -11.43 7.11 99.48 0.71 -10.73 15 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 12 S 1.35 50.10 13.03 -56.49 -0.74 49.36 15 13 O -0.92 -45.21 16.77 -148.98 -2.50 -47.71 15 14 C -0.46 -14.59 4.80 22.27 0.11 -14.48 15 15 C -0.03 -0.63 9.75 22.27 0.22 -0.41 15 16 C -0.12 -2.66 9.83 22.29 0.22 -2.44 15 17 C -0.02 -0.38 6.32 22.32 0.14 -0.24 15 18 Cl -0.06 -1.32 28.96 -2.72 -0.08 -1.40 15 19 C -0.14 -3.99 9.83 22.29 0.22 -3.77 15 20 C -0.06 -2.23 8.23 22.26 0.18 -2.05 15 21 H 0.01 0.30 8.10 -2.39 -0.02 0.28 15 22 H 0.06 3.47 6.07 -2.39 -0.01 3.45 15 23 H 0.03 1.44 6.37 -2.39 -0.02 1.43 15 24 H 0.26 13.94 8.31 -92.71 -0.77 13.17 15 25 H 0.19 2.61 8.06 -2.91 -0.02 2.59 15 26 H 0.17 2.44 8.06 -2.91 -0.02 2.42 15 27 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.10 4.19 7.45 -2.91 -0.02 4.17 15 Total: -1.00 -70.57 271.28 2.58 -67.99 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.17 Total: 4.26 kcal Atomic # 6 Polarization: -69.00 SS G_CDS: 2.45 Total: -66.55 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.24 Total: -50.38 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.50 Total: -47.71 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 50.10 SS G_CDS: -0.74 Total: 49.36 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -70.57 2.58 -67.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788057.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.254 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds