Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 S 1.81402 * 109.46679 * 119.99649 * 2 1 3 13 13 O 1.42101 * 109.47093 * 54.05545 * 12 2 1 14 14 C 1.76201 * 103.00130 * 304.99997 * 12 2 1 15 15 C 1.38250 * 119.98577 * 269.73059 * 14 12 2 16 16 C 1.38215 * 120.01163 * 179.72726 * 15 14 12 17 17 C 1.38357 * 119.98513 * 0.54330 * 16 15 14 18 18 Cl 1.73594 * 120.00991 * 179.70787 * 17 16 15 19 19 C 1.38353 * 119.97269 * 359.72667 * 17 16 15 20 20 C 1.38216 * 119.98918 * 0.02562 * 19 17 16 21 21 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08001 * 119.98880 * 359.97438 * 15 14 12 26 26 H 1.07990 * 120.00358 * 180.27033 * 16 15 14 27 27 H 1.07998 * 120.00461 * 179.97438 * 19 17 16 28 28 H 1.07995 * 119.99180 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 16 2.1346 -0.8551 1.4812 13 8 1.5510 -2.1487 1.5527 14 6 1.3382 0.0120 2.7922 15 6 1.9533 1.1069 3.3704 16 6 1.3266 1.7908 4.3950 17 6 0.0886 1.3727 4.8496 18 17 -0.6957 2.2267 6.1415 19 6 -0.5239 0.2736 4.2744 20 6 0.1015 -0.4065 3.2464 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7173 1.1669 -3.4844 25 1 2.9219 1.4302 3.0185 26 1 1.8052 2.6487 4.8435 27 1 -1.4901 -0.0535 4.6291 28 1 -0.3764 -1.2648 2.7976 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788064.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = -47.767692 kcal Electronic energy + Delta-G solvation = -14643.374423 eV Core-core repulsion = 12003.758132 eV Total energy + Delta-G solvation = -2639.616290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.10161 -37.50369 -36.57347 -35.93832 -32.49251 -32.06366 -31.59520 -27.35853 -23.95014 -23.80255 -23.25186 -19.29620 -18.32560 -17.94977 -17.02348 -16.55211 -16.42659 -15.65038 -15.35876 -14.89428 -14.47661 -14.46485 -13.96273 -13.56905 -13.15786 -12.99643 -12.89603 -12.74501 -12.56706 -12.52151 -12.30210 -12.07840 -11.85264 -11.18143 -10.82605 -10.49610 -10.03847 -9.95611 -9.01126 -8.14079 -6.33868 -0.19622 0.28884 0.98967 1.23764 1.40135 1.43886 1.55093 2.12425 2.40732 2.60959 3.08462 3.23968 3.77570 3.90487 4.36661 4.40703 4.59808 4.64705 4.78079 4.88048 4.92921 5.00115 5.14995 5.31025 5.38876 5.63185 5.73167 5.76988 6.12184 6.75147 7.34604 8.88661 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.042984 B = 0.005189 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.246172 B = 5394.994886 C = 5620.667965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.251 4.251 3 H 0.082 0.918 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.289 1.289 11 H -0.268 1.268 12 S 1.355 4.645 13 O -0.922 6.922 14 C -0.456 4.456 15 C -0.027 4.027 16 C -0.124 4.124 17 C -0.015 4.015 18 Cl -0.062 7.062 19 C -0.138 4.138 20 C -0.064 4.064 21 H 0.006 0.994 22 H 0.032 0.968 23 H 0.062 0.938 24 H 0.263 0.737 25 H 0.188 0.812 26 H 0.170 0.830 27 H 0.140 0.860 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 5.315 14.040 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.370 4.370 3 H 0.100 0.900 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.188 1.188 10 H -0.215 1.215 11 H -0.193 1.193 12 S 1.556 4.444 13 O -0.918 6.918 14 C -0.552 4.552 15 C -0.046 4.046 16 C -0.143 4.143 17 C -0.042 4.042 18 Cl -0.033 7.033 19 C -0.157 4.157 20 C -0.084 4.084 21 H 0.025 0.975 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.205 0.795 26 H 0.188 0.812 27 H 0.158 0.842 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.382 4.714 14.126 15.524 hybrid contribution -2.783 -0.512 -1.108 3.039 sum 1.599 4.202 13.018 13.773 Atomic orbital electron populations 1.21608 0.98169 0.97857 1.00724 1.24962 0.98298 1.05568 1.08122 0.89975 1.20857 1.32590 1.12477 0.90715 0.92176 1.25670 0.94833 0.95440 1.01756 1.69994 1.36728 1.23696 1.24170 0.85588 0.78220 0.79118 0.79343 1.18829 1.21499 1.19276 1.68097 1.12435 0.80720 0.83119 1.92879 1.79445 1.34427 1.85099 1.28105 1.03816 1.08452 1.14857 1.21372 1.00532 0.90331 0.92369 1.21569 0.93325 1.01611 0.97843 1.21233 0.95274 0.94919 0.92769 1.98365 1.80505 1.76285 1.48134 1.21190 1.01287 0.95861 0.97402 1.21014 0.94389 0.97818 0.95136 0.97524 0.94929 0.91931 0.92737 0.79515 0.81205 0.84219 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.27 8.56 71.98 0.62 -5.65 15 2 C -0.25 -11.69 2.80 29.85 0.08 -11.60 15 3 H 0.08 3.72 8.14 -2.39 -0.02 3.70 15 4 C -0.53 -27.87 8.58 25.60 0.22 -27.65 15 5 H 0.06 3.13 7.71 -2.91 -0.02 3.11 15 6 C 0.02 1.30 5.31 84.65 0.45 1.75 15 7 N -0.91 -50.63 11.33 21.45 0.24 -50.39 15 8 Si 0.95 42.38 29.54 68.60 2.03 44.41 15 9 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 12 S 1.35 50.09 13.03 -56.49 -0.74 49.36 15 13 O -0.92 -45.20 16.77 -148.98 -2.50 -47.70 15 14 C -0.46 -14.58 4.80 22.27 0.11 -14.48 15 15 C -0.03 -0.63 9.75 22.27 0.22 -0.41 15 16 C -0.12 -2.66 9.83 22.29 0.22 -2.44 15 17 C -0.02 -0.38 6.32 22.33 0.14 -0.24 15 18 Cl -0.06 -1.32 28.96 -2.72 -0.08 -1.40 15 19 C -0.14 -3.99 9.83 22.29 0.22 -3.77 15 20 C -0.06 -2.23 8.23 22.26 0.18 -2.05 15 21 H 0.01 0.31 8.10 -2.39 -0.02 0.29 15 22 H 0.03 1.45 6.37 -2.39 -0.02 1.43 15 23 H 0.06 3.45 6.08 -2.38 -0.01 3.43 15 24 H 0.26 13.95 8.31 -92.71 -0.77 13.18 15 25 H 0.19 2.61 8.06 -2.91 -0.02 2.59 15 26 H 0.17 2.44 8.06 -2.92 -0.02 2.42 15 27 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.10 4.20 7.45 -2.91 -0.02 4.17 15 Total: -1.00 -70.58 271.30 2.58 -68.00 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.17 Total: 4.27 kcal Atomic # 6 Polarization: -69.00 SS G_CDS: 2.46 Total: -66.54 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.24 Total: -50.39 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -2.50 Total: -47.70 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.74 Total: 49.36 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -70.58 2.58 -68.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788064.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.232 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds