Wall clock time and date at job start Mon Mar 30 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47649 * 2 1 4 4 C 1.50704 * 109.46796 * 239.99879 * 2 1 3 5 5 H 1.07996 * 120.00141 * 239.99586 * 4 2 1 6 6 C 1.37875 * 119.99753 * 60.00359 * 4 2 1 7 7 N 1.31515 * 120.00254 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46962 * 89.99771 * 8 6 4 10 10 H 1.48505 * 109.47294 * 209.99984 * 8 6 4 11 11 H 1.48500 * 109.46995 * 329.99848 * 8 6 4 12 12 S 1.81403 * 109.47549 * 120.00204 * 2 1 3 13 13 O 1.42094 * 109.47266 * 195.94206 * 12 2 1 14 14 C 1.76195 * 102.99780 * 304.99837 * 12 2 1 15 15 C 1.38237 * 120.00759 * 94.99451 * 14 12 2 16 16 C 1.38224 * 120.01313 * 179.74137 * 15 14 12 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.00870 * 275.27160 * 14 12 2 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 12 21 21 H 1.08996 * 109.47291 * 59.99473 * 1 2 3 22 22 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46531 * 299.99801 * 1 2 3 24 24 H 0.97002 * 119.99960 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.99593 * 0.02755 * 15 14 12 26 26 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 27 27 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 16 2.1348 -0.8552 1.4811 13 8 3.5071 -0.5451 1.6799 14 6 1.3386 0.0118 2.7922 15 6 0.1517 -0.4655 3.3161 16 6 -0.4703 0.2116 4.3482 17 6 0.0914 1.3695 4.8536 18 6 1.2747 1.8509 4.3267 19 6 1.8980 1.1733 3.2936 20 17 3.3844 1.7776 2.6309 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.7081 1.1609 -3.4844 25 1 -0.2874 -1.3702 2.9220 26 1 -1.3955 -0.1637 4.7597 27 1 -0.3953 1.8983 5.6598 28 1 1.7136 2.7552 4.7218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:13 Heat of formation + Delta-G solvation = -14.916157 kcal Electronic energy + Delta-G solvation = -14982.117453 eV Core-core repulsion = 12343.925712 eV Total energy + Delta-G solvation = -2638.191741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.83361 -35.94850 -34.58082 -33.96094 -31.06677 -30.42831 -30.10473 -25.28690 -22.79487 -22.39124 -21.37743 -17.90918 -16.49288 -16.13622 -15.31068 -15.22913 -14.87523 -13.96304 -13.78629 -13.53621 -13.21475 -12.84085 -12.32438 -11.80618 -11.41751 -11.27950 -11.08130 -11.06603 -10.86365 -10.62801 -10.39810 -10.31549 -10.00761 -9.22301 -9.04889 -8.76765 -8.52597 -8.43045 -7.20269 -6.10028 -4.22796 1.18320 1.41905 2.51031 2.81640 3.25566 3.32781 3.37853 3.63563 3.96931 4.35456 4.83398 5.01174 5.07262 5.21682 5.32732 5.56234 5.80486 5.96988 6.28819 6.38532 6.48621 6.65174 6.78416 6.86762 6.95605 7.41301 7.67022 7.82580 8.14465 8.78318 9.42357 10.94880 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.007326 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.737566 B = 3821.271992 C = 4132.858228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.223 4.223 3 H 0.051 0.949 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.073 3.927 7 N -0.881 5.881 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.271 1.271 12 S 1.265 4.735 13 O -0.851 6.851 14 C -0.434 4.434 15 C -0.036 4.036 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.136 4.136 19 C 0.017 3.983 20 Cl -0.040 7.040 21 H 0.090 0.910 22 H 0.041 0.959 23 H 0.015 0.985 24 H 0.263 0.737 25 H 0.140 0.860 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -2.532 11.931 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.344 4.344 3 H 0.069 0.931 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.131 4.131 7 N -0.518 5.518 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.196 1.196 12 S 1.465 4.535 13 O -0.847 6.847 14 C -0.527 4.527 15 C -0.055 4.055 16 C -0.159 4.159 17 C -0.110 4.110 18 C -0.155 4.155 19 C -0.011 4.011 20 Cl -0.010 7.010 21 H 0.108 0.892 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.073 0.927 25 H 0.158 0.842 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.449 -3.095 11.889 13.066 hybrid contribution 0.765 2.148 -0.835 2.428 sum -3.684 -0.947 11.054 11.690 Atomic orbital electron populations 1.21532 0.95132 1.00077 1.01323 1.24695 0.99665 1.04793 1.05270 0.93113 1.20408 1.32396 1.12802 0.89088 0.91916 1.24904 0.94567 0.94730 0.98905 1.69889 1.35815 1.22425 1.23653 0.86513 0.79536 0.79418 0.82174 1.20183 1.21123 1.19586 1.69133 0.87628 1.11772 0.85013 1.93114 1.27104 1.82204 1.82247 1.28336 1.04758 1.03785 1.15864 1.20842 0.92027 0.98760 0.93836 1.21286 1.00467 0.96225 0.97940 1.21122 0.94716 0.96118 0.99018 1.21118 0.96706 1.00643 0.97077 1.20970 0.89739 0.94606 0.95781 1.98436 1.31567 1.86795 1.84232 0.89156 0.94015 0.96590 0.92738 0.84180 0.85484 0.85627 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 8.71 37.16 0.32 -2.31 15 2 C -0.22 -5.39 2.80 -27.88 -0.08 -5.47 15 3 H 0.05 1.42 8.14 -51.92 -0.42 1.00 15 4 C -0.51 -13.45 8.58 -34.44 -0.30 -13.74 15 5 H 0.06 1.61 7.71 -52.49 -0.40 1.20 15 6 C 0.07 1.97 5.30 -17.82 -0.09 1.88 15 7 N -0.88 -24.64 11.32 55.43 0.63 -24.01 15 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 12 S 1.27 25.22 12.75 -107.50 -1.37 23.85 15 13 O -0.85 -20.90 14.61 -35.23 -0.51 -21.41 15 14 C -0.43 -7.76 4.63 -39.55 -0.18 -7.94 15 15 C -0.04 -0.50 8.98 -39.59 -0.36 -0.85 15 16 C -0.14 -1.71 10.05 -39.58 -0.40 -2.11 15 17 C -0.09 -1.16 10.05 -39.59 -0.40 -1.56 15 18 C -0.14 -2.08 9.83 -39.55 -0.39 -2.47 15 19 C 0.02 0.32 6.28 -39.50 -0.25 0.07 15 20 Cl -0.04 -0.84 25.57 -51.86 -1.33 -2.16 15 21 H 0.09 2.25 6.07 -51.93 -0.32 1.94 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.02 0.30 6.62 -51.92 -0.34 -0.04 15 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 25 H 0.14 1.47 8.06 -52.49 -0.42 1.04 15 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 15 27 H 0.13 1.18 8.06 -52.48 -0.42 0.76 15 28 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -33.06 267.55 -8.42 -41.48 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.74 Total: -2.98 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: -2.12 Total: -34.51 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.63 Total: -24.01 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.51 Total: -21.41 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 25.22 SS G_CDS: -1.37 Total: 23.85 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.33 Total: -2.16 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.06 -8.42 -41.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.563 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds