Wall clock time and date at job start Mon Mar 30 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47649 * 2 1 4 4 C 1.50704 * 109.46796 * 239.99879 * 2 1 3 5 5 H 1.07996 * 120.00141 * 239.99586 * 4 2 1 6 6 C 1.37875 * 119.99753 * 60.00359 * 4 2 1 7 7 N 1.31515 * 120.00254 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46962 * 89.99771 * 8 6 4 10 10 H 1.48505 * 109.47294 * 209.99984 * 8 6 4 11 11 H 1.48500 * 109.46995 * 329.99848 * 8 6 4 12 12 S 1.81403 * 109.47549 * 120.00204 * 2 1 3 13 13 O 1.42094 * 109.47266 * 195.94206 * 12 2 1 14 14 C 1.76195 * 102.99780 * 304.99837 * 12 2 1 15 15 C 1.38237 * 120.00759 * 94.99451 * 14 12 2 16 16 C 1.38224 * 120.01313 * 179.74137 * 15 14 12 17 17 C 1.38264 * 120.02445 * 0.26351 * 16 15 14 18 18 C 1.38190 * 120.01695 * 0.02562 * 17 16 15 19 19 C 1.38328 * 120.00870 * 275.27160 * 14 12 2 20 20 Cl 1.73603 * 120.01189 * 0.02562 * 19 14 12 21 21 H 1.08996 * 109.47291 * 59.99473 * 1 2 3 22 22 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46531 * 299.99801 * 1 2 3 24 24 H 0.97002 * 119.99960 * 180.02562 * 7 6 4 25 25 H 1.08002 * 119.99593 * 0.02755 * 15 14 12 26 26 H 1.07996 * 119.98813 * 180.23496 * 16 15 14 27 27 H 1.08004 * 119.98845 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.00844 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 16 2.1348 -0.8552 1.4811 13 8 3.5071 -0.5451 1.6799 14 6 1.3386 0.0118 2.7922 15 6 0.1517 -0.4655 3.3161 16 6 -0.4703 0.2116 4.3482 17 6 0.0914 1.3695 4.8536 18 6 1.2747 1.8509 4.3267 19 6 1.8980 1.1733 3.2936 20 17 3.3844 1.7776 2.6309 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 0.7081 1.1609 -3.4844 25 1 -0.2874 -1.3702 2.9220 26 1 -1.3955 -0.1637 4.7597 27 1 -0.3953 1.8983 5.6598 28 1 1.7136 2.7552 4.7218 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:13 Heat of formation + Delta-G solvation = -36.667034 kcal Electronic energy + Delta-G solvation = -14983.060642 eV Core-core repulsion = 12343.925712 eV Total energy + Delta-G solvation = -2639.134930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.99248 -37.38876 -36.37650 -35.90121 -32.50642 -31.82450 -31.52473 -27.23960 -23.99872 -23.58159 -23.17835 -19.29881 -18.30700 -17.65251 -16.91864 -16.54750 -16.38950 -15.51924 -15.23179 -14.92512 -14.66878 -14.34462 -14.10073 -13.33571 -12.96463 -12.93783 -12.73599 -12.44024 -12.38727 -12.21106 -12.18080 -12.14820 -11.64961 -11.13212 -10.65948 -10.48207 -10.07781 -9.68304 -8.95282 -8.12092 -6.32242 -0.05080 0.28960 1.07864 1.35935 1.42529 1.44856 1.54852 2.18225 2.42380 2.68539 3.12528 3.32012 3.93179 4.10053 4.36756 4.47353 4.64987 4.83812 4.92424 5.03383 5.05192 5.19212 5.30398 5.42845 5.48794 5.70636 5.92313 5.93194 6.23104 6.77995 7.36259 8.91453 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.007326 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.737566 B = 3821.271992 C = 4132.858228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.241 4.241 3 H -0.004 1.004 4 C -0.525 4.525 5 H 0.065 0.935 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.256 1.256 10 H -0.289 1.289 11 H -0.272 1.272 12 S 1.335 4.665 13 O -0.905 6.905 14 C -0.464 4.464 15 C -0.032 4.032 16 C -0.127 4.127 17 C -0.077 4.077 18 C -0.147 4.147 19 C -0.017 4.017 20 Cl -0.083 7.083 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.262 0.738 25 H 0.179 0.821 26 H 0.176 0.824 27 H 0.169 0.831 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -3.996 13.897 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.361 4.361 3 H 0.014 0.986 4 C -0.564 4.564 5 H 0.083 0.917 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.181 1.181 10 H -0.215 1.215 11 H -0.197 1.197 12 S 1.537 4.463 13 O -0.900 6.900 14 C -0.560 4.560 15 C -0.051 4.051 16 C -0.146 4.146 17 C -0.095 4.095 18 C -0.167 4.167 19 C -0.045 4.045 20 Cl -0.054 7.054 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.197 0.803 26 H 0.194 0.806 27 H 0.186 0.814 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.919 -4.579 13.818 16.118 hybrid contribution 1.405 2.651 -1.199 3.231 sum -5.514 -1.929 12.619 13.905 Atomic orbital electron populations 1.21370 0.93338 1.01706 1.00508 1.24857 1.01397 1.01890 1.07907 0.98564 1.20833 1.32151 1.12964 0.90486 0.91725 1.25724 0.94808 0.95437 1.01892 1.70043 1.37048 1.23793 1.24076 0.85599 0.79254 0.78622 0.78547 1.18079 1.21491 1.19664 1.68239 0.85417 1.09770 0.82919 1.93011 1.30721 1.83208 1.83103 1.27955 1.07165 1.04739 1.16175 1.21409 0.90089 0.99862 0.93758 1.21880 1.01379 0.95090 0.96220 1.21702 0.92961 0.96014 0.98852 1.21399 0.97819 1.01071 0.96392 1.21288 0.89189 0.96157 0.97837 1.98414 1.34475 1.87377 1.85103 0.92725 0.90974 0.94583 0.92888 0.80343 0.80642 0.81404 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 8.71 71.98 0.63 -4.13 15 2 C -0.24 -11.98 2.80 29.85 0.08 -11.90 15 3 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 4 C -0.53 -28.49 8.58 25.60 0.22 -28.27 15 5 H 0.06 3.37 7.71 -2.91 -0.02 3.35 15 6 C 0.02 1.22 5.30 84.65 0.45 1.67 15 7 N -0.91 -52.65 11.32 21.45 0.24 -52.40 15 8 Si 0.96 43.01 29.54 68.60 2.03 45.04 15 9 H -0.26 -10.65 7.11 99.48 0.71 -9.95 15 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 15 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 12 S 1.34 53.38 12.75 -56.49 -0.72 52.66 15 13 O -0.90 -45.90 14.61 -148.98 -2.18 -48.08 15 14 C -0.46 -15.88 4.63 22.29 0.10 -15.78 15 15 C -0.03 -0.76 8.98 22.27 0.20 -0.56 15 16 C -0.13 -2.33 10.05 22.27 0.22 -2.10 15 17 C -0.08 -1.57 10.05 22.26 0.22 -1.34 15 18 C -0.15 -4.20 9.83 22.29 0.22 -3.98 15 19 C -0.02 -0.64 6.28 22.32 0.14 -0.50 15 20 Cl -0.08 -3.65 25.57 -2.72 -0.07 -3.72 15 21 H 0.05 2.76 6.07 -2.39 -0.01 2.75 15 22 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.04 1.35 6.62 -2.38 -0.02 1.34 15 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 15 25 H 0.18 2.71 8.06 -2.91 -0.02 2.69 15 26 H 0.18 1.65 8.06 -2.91 -0.02 1.62 15 27 H 0.17 2.02 8.06 -2.91 -0.02 2.00 15 28 H 0.14 3.47 8.06 -2.91 -0.02 3.45 15 Total: -1.00 -77.00 267.55 2.96 -74.04 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.16 Total: -0.65 kcal Atomic # 6 Polarization: -69.38 SS G_CDS: 2.49 Total: -66.89 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.24 Total: -52.40 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.18 Total: -48.08 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.72 Total: 52.66 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.07 Total: -3.72 kcal Total: -77.00 2.96 -74.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.372 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds